G101938


Basic Information

Item Value
gene id G101938
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19490529 ~ 19491255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120665
caaattCGTTACATCAACAAGACTCAACACCTTCTAGGGAATcagtataatatatacacacatgcatcagccgtaacattaaaaccactgacaggtgaagtgaatactATTAATTCTCTCATTACAGTCACACCAAGgggtcaaggggtgggatatatattaggtagcaagtgaacagtcagttctcgaagctgatgggcaagcgtaaggatctgagcaactctgacaagggccaaattgtgacggctagatgactgggtcagaatatctccaaaatggcaggtcaaatcttgtggggtgttcccggtatgcagtggttattaCAAAGCAAAAGTGGAAGGACAACTGgtgaactggcgacagggtcatgggcacccaaggctcattgattcTCGGAGGGAGACTAGCCCATCTGGCGCAAGCCCACAGAAGAGCtgttgtagcacaaattgctgaaactgttaatgctggctataatATAAAGGTGTCAAACACAGTTCATcgtagctgcagactggtcagactgcccatgctgacccatgtccactgctgaaagggCCTATAGTGGGAATATGAGCATCAGTTCAAGTTGTTGACTTGGCCCCAAATTTCCCAGAtttcaatctgattgagcatttGTGGTATGtgttggacaaacaagtccgatccatggagaccTCAGCTCGCAACTTAcgggacttaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120665 True 705 lncRNA 0.46 2 19490529 19491255

Neighbor

gene id symbol gene type direction distance location
dhx34 dhx34 coding downstream 157099 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 748805 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 966303 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1765209 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 2012244 17422361 ~ 17478285 (-)
LOC113526513 cxcr5 coding upstream 560077 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 723887 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 871075 20362330 ~ 20377332 (-)
ccnp NA coding upstream 891555 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 931018 20422273 ~ 20453147 (-)
G101932 NA non-coding downstream 95225 19395071 ~ 19395304 (-)
LOC113526920 NA non-coding downstream 126720 19362572 ~ 19363809 (-)
G101865 NA non-coding downstream 129521 19360792 ~ 19361008 (-)
LOC113527011 NA non-coding downstream 139586 19350762 ~ 19350943 (-)
G101846 NA non-coding downstream 191167 19298891 ~ 19299362 (-)
G101939 ciapin1 non-coding upstream 9082 19500337 ~ 19583769 (-)
LOC113526834 NA non-coding upstream 23544 19514799 ~ 19517762 (-)
G101955 NA non-coding upstream 94385 19585640 ~ 19585839 (-)
G102082 NA non-coding upstream 363275 19854530 ~ 19854763 (-)
G102129 cdon non-coding upstream 452456 19943711 ~ 19967777 (-)
G101178 NA other downstream 1293723 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4132966 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5143521 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5927955 13550680 ~ 13562574 (-)
G98770 NA other downstream 6438218 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 488814 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 904611 20395866 ~ 20416574 (-)
G102566 NA other upstream 1462347 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1504086 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2740193 22231448 ~ 22306769 (-)

Expression


Co-expression Network