G101939 (ciapin1)


Basic Information

Item Value
gene id G101939
gene name ciapin1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19500337 ~ 19583769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120668
CACAGTTTATTTGGTTTTATAATAATGGTATCCATTATAAAGCAATCAGTAAAGTGTTGTACAGTAGTCCACAACATAATTTGGTTTAAAATGCATGACATTAATAAGAAATTTACCAGAAACATTTCTAGTATGCAATGATTTAAGCAAATGTCACATTTTgatattcatgttttttaataGTGTTGAATTATAAGTCATAAAATTCTTTAGGATTATACCTCTAGGTAACTGTTATGCATATCCCAGATacccattttttaaatctcatgtTAGCATAATTGAGCTAgactttgattttatttatattttaaaagtaaagatgTACTGGTATTTAGCAACAGCGACAGAGACAGTAGGTGAAGATGCATAGCGGCTGTGATTCAGGAATGATAGCTCTGAAGAGAGGAAACAGTGCAGACCCCTAGACAGTTTTCTTAACTCAATGCATATTGGCATTCACACATTAAGGCTTGCCAGTCTCCCCAACGAGTTAAATTGTTTCTCACTTCTGAAGACTTTACTGATCAGGAAGATCGTCCCCATCATTATGTTAGGTAGATCTTTGCATATGAGGGCATAGGGCCATgaagaattattggcacccttcatgaaaatgagtgaaaattaatataaatttaaaagagTACGCAGTGTGATCTCAAACATAGAGAGacattgtatagttttattttatagttttacacacacacacacacacactatatgtgtgtgtgtgtgtgatatatatatatatatatatatatatatatatatatatatatatatataatgtatgcacatacatacagtggatataaaaagtttacacatcctgttaaaatgtcaggtttttgtgaagtaaaagaatgaaactaagataaatcatgtcataaaTCAtgtcttttcccacctttaatgtgacactGCAAGGcacacaaataaagtgaaaaacaatcagaaattttttaagggaaaaaggaaaaataaaaaacttgcaataacctagttgcataagtgtgcacacccctaaactaatactttgttgaagcaccttttgattttattacaccactcagtcttttggactgagtctatcagcatggcacatcttgacttggcaatattttcctaCTCTTTCTTGCagaaacattctagatccatcaaactgTAAGggaatctcctgtgcacagcccacaGGAcatccacagatttttagttggattcaggtctgggctctggctaggtaattcaaaaacattgatcttcttttgattaagccattcctttgttgatttggatgtatgctttgagtcactgtcatactgaaaggtgaaatttcttttcatcttcagcttactagcagacatctgaatgttttgcactaaaatcgtaGCTATTCATGATCCCCTctaccttgataaaagccccggTTCCGGCTGAACAAAAGcaaccccaaagcatgatgctgcacCATGGacatggtgttcttttggtgatgtgctttctttttttgcacaaaGCATAAcgtttggaattatggaattattataccttttggaatttgtctcatcagaccataatgcattttgccacatagtttggggtgatttacttgagcttggatgttttttgtgagaaaggatttctgtctagccaccctacctaTAGCCCAGACATgcgaagaatacgagagattgttgtcacatgcagagagtaatcagtacttgtcagatattcctgcatctcctttaatgttgcagtaggcctcttggcagcctccctggtaagtttttgtcttgtctttttatcaattttggagggacgtcctgttcttggtgatgtcactgtggagctccattttttatatttgttgatGATAGCCTttacggtgttccatggtatatctaatgttttggaaatttgtttatacccctctcctgattgatacctttcaacaagtgggataccatgcatgctttgtaagctctttgcggaccatggcttcaggagtcggatgaaaccaagaagatgtgaagaaaatcagctggtctttatttggggttatcagaataatttcattgatgacagctgtatgatgattacttttgaacatgagattgaatgtgagtgtttcattctgaacacagcagcatctccaattataaaagggtgtgcacacttatgcaaccagGAGATTGCAAC

Function

symbol description
ciapin1 Predicted to enable 2 iron, 2 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrial intermembrane space and nucleus. Predicted to be active in cytoplasm. Orthologous to human CIAPIN1 (cytokine induced apoptosis inhibitor 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120668 True 2205 lncRNA 0.36 2 19500337 19583769

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a,LOC108264692 coding downstream 3344 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 166907 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 758613 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 976111 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1775017 17720545 ~ 17725320 (-)
LOC113526513 cxcr5 coding upstream 467563 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 631373 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 778561 20362330 ~ 20377332 (-)
ccnp NA coding upstream 799041 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 838504 20422273 ~ 20453147 (-)
G101938 NA non-coding downstream 9082 19490529 ~ 19491255 (-)
G101932 NA non-coding downstream 105033 19395071 ~ 19395304 (-)
LOC113526920 NA non-coding downstream 136528 19362572 ~ 19363809 (-)
G101865 NA non-coding downstream 139329 19360792 ~ 19361008 (-)
LOC113527011 NA non-coding downstream 149394 19350762 ~ 19350943 (-)
G101955 NA non-coding upstream 1871 19585640 ~ 19585839 (-)
G102082 NA non-coding upstream 270761 19854530 ~ 19854763 (-)
G102129 cdon non-coding upstream 359942 19943711 ~ 19967777 (-)
G102146 NA non-coding upstream 415194 19998963 ~ 19999181 (-)
G102147 NA non-coding upstream 416332 20000101 ~ 20000323 (-)
G101178 NA other downstream 1303531 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4142774 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5153329 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5937763 13550680 ~ 13562574 (-)
G98770 NA other downstream 6448026 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 396300 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 812097 20395866 ~ 20416574 (-)
G102566 NA other upstream 1369833 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1411572 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2647679 22231448 ~ 22306769 (-)

Expression


Co-expression Network