G101955


Basic Information

Item Value
gene id G101955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19585640 ~ 19585839 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120685
gttctttgTTAAAAGCTTTTTTATGTGGAAGCGCGCATGAGCGCAGTGAGGTGGAACTTTTAATAAGAGGAGGTTCATGTGATAATCCTCCGTCATGTCCCAGAGGAATGTTAGCAAACTCTAGCTAATAGATACACctacatatttacattcacagaTCTGGTGTGGTGTTAAGATAAACTATTGCAGATGGCAAACTG

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU120685 True 200 lncRNA 0.40 1 19585640 19585839

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a,LOC108264692 coding downstream 88647 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 252210 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 843916 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1061414 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1860320 17720545 ~ 17725320 (-)
LOC113526513 cxcr5 coding upstream 465493 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 629303 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 776491 20362330 ~ 20377332 (-)
ccnp NA coding upstream 796971 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 836434 20422273 ~ 20453147 (-)
G101939 ciapin1 non-coding downstream 1871 19500337 ~ 19583769 (-)
LOC113526834 NA non-coding downstream 67878 19514799 ~ 19517762 (-)
G101938 NA non-coding downstream 94385 19490529 ~ 19491255 (-)
G101932 NA non-coding downstream 190336 19395071 ~ 19395304 (-)
LOC113526920 NA non-coding downstream 221831 19362572 ~ 19363809 (-)
G102082 NA non-coding upstream 268691 19854530 ~ 19854763 (-)
G102129 cdon non-coding upstream 357872 19943711 ~ 19967777 (-)
G102146 NA non-coding upstream 413124 19998963 ~ 19999181 (-)
G102147 NA non-coding upstream 414262 20000101 ~ 20000323 (-)
G102224 NA non-coding upstream 503752 20089591 ~ 20092328 (-)
G101178 NA other downstream 1388834 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4228077 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5238632 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6023066 13550680 ~ 13562574 (-)
G98770 NA other downstream 6533329 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 394230 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 810027 20395866 ~ 20416574 (-)
G102566 NA other upstream 1367763 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1409502 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2645609 22231448 ~ 22306769 (-)

Expression


Co-expression Network