G102082


Basic Information

Item Value
gene id G102082
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19854530 ~ 19854763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120832
ttttcttccctgacggcacaggcatattccaggatgaaaatgctaagattcatcaggcttaacttgtgaaagagtcgttcagggagcatgaggaatcattttcacacatgaattggccaccacagagtcctgaccttaaccccattgaaagtctttgggatgtgctggagaagactttacagagtggttagactctcctgtcctcaatgcaagatctcagccaaaaattaatgc

Function

NR:

description
PREDICTED: histidine-rich glycoprotein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120832 True 234 lncRNA 0.44 1 19854530 19854763

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a,LOC108264692 coding downstream 357537 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 521100 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1112806 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1330304 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 2129210 17720545 ~ 17725320 (-)
LOC113526513 cxcr5 coding upstream 196569 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 360379 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 507567 20362330 ~ 20377332 (-)
ccnp NA coding upstream 528047 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 567510 20422273 ~ 20453147 (-)
G101955 NA non-coding downstream 268691 19585640 ~ 19585839 (-)
G101939 ciapin1 non-coding downstream 270761 19500337 ~ 19583769 (-)
LOC113526834 NA non-coding downstream 336768 19514799 ~ 19517762 (-)
G101938 NA non-coding downstream 363275 19490529 ~ 19491255 (-)
G101932 NA non-coding downstream 459226 19395071 ~ 19395304 (-)
G102129 cdon non-coding upstream 88948 19943711 ~ 19967777 (-)
G102146 NA non-coding upstream 144200 19998963 ~ 19999181 (-)
G102147 NA non-coding upstream 145338 20000101 ~ 20000323 (-)
G102224 NA non-coding upstream 234828 20089591 ~ 20092328 (-)
G102225 NA non-coding upstream 238221 20092984 ~ 20093802 (-)
G101178 NA other downstream 1657724 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4496967 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5507522 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6291956 13550680 ~ 13562574 (-)
G98770 NA other downstream 6802219 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 125306 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 541103 20395866 ~ 20416574 (-)
G102566 NA other upstream 1098839 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1140578 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2376685 22231448 ~ 22306769 (-)

Expression


Co-expression Network