G102224


Basic Information

Item Value
gene id G102224
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20089591 ~ 20092328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120999
TTTTTGGATGAACAGTTTTAATGATTCCAATAGATATGGTGAGACGCACCCCAGCTCAATCTTCAGAGAAAATCTTGAAGTCCACAGCACATCCCGCCAACACACAGCAGTCCAGACAGGTGACCATGCATTCCAACACCTGTGGGATATGCTGTGTTCTCCAGGGCAAATAGTTACCCAAAAGTAAAAATTGCAAGGCAGCTGCCAAAACCTTGCATGACTTCCATTCTCTCACCTAAAGCCACACAGatagtgtatttgtttttttttcttctccctccCCAAAAATAAGAGCATATGGTCAATTTTAATAATACGCTATCTGCGTGCATATCAGGCCGCTGTAGAGTAGAGAATAAAAGTCTGGATTCAAACCATGCCACTATAGGGTGCTGCAATTTTCCAAAACACATCACCAACCTTGTTTTGCAAATGTACTTAGCCAATTAAGCCTGTTTTGGTAACCCGACACACCCTTTTGCAACATCCCATAGTAGCCAAAGTTGATCCACCAAAACACACGTCTCATTTTTGATTACTTATTCACGGGGAATTCCCAAGGACTGTCATGCAGACAACTGCAACTTGATGTCAGTAGTCAGTGACAATTGGGATACAAATACCAGTTATTCCCATTCCCATCCCCAACCCAGCAAGAACCCCAACCCTGCAAATTCCCTTAGTCTTCAAATGGGAACTCAAATTCAGGTCTCctaaacaaaccacaaaaatgCTGTTTACCTAGAATTCCTTTAGTGTTAAAGGAGGGTCATTAAAACCTCTCAATacagaaaatgaacaaacattTGGTTATAAGCACCCATTATGTTCTCCCATTTTCAGAACACTCCCGCACCCCAAACACCTCTGAACACTTCAGCCCCTAGCGGGCTATTGTGCAGTCAGTCTTATTGCCCAGTCCCCAAACACAAGTTGCAACTTTAGTGCAGGACAGATAGgtaaaggtttctttttttagctCTGTAGTTTTTGAGaaaattggattaaaaaaaaaaaaaaaacagaaaaaaacagaacacaagACCTGTTTCCTTGAGAGCTACATTTGTCAATTCCCATTTTTTGGACTGTCTGCATTTGTTCTGACTTCTGAATGGCAGACTCCCCCCCCCCCAAAGCACatcttttttctccatctgAAAGCATCATGTACCAGTGCCAATGGCAGTGAACAATGATCAGTGTAACAGTATCATATACCATGATGCAAATATTTTCTCTCATATGCGAGTCACCATGAACAGGGACCCAACGAGTGCTTTGTAAGTCAGTGGAACAAGCAAAGGCTGGAGAGCAGATAATCTAGTTAAGCTACTAACATCAAGATGAGGTGCCCATAACACCACTGATAGAGGTTTAACTAAAAATGCTTTGAACTGTTCGGGACATTTTGTGCACAGTAAATAAACCTGGCCAAtgcttcaaaaaaataaataaatctggagtccaattttttataaacaaaagatCTGACATCACTTCAAGTtttaagcctttttttaaatcaccgAAAAGGTGACAGCTTGACAGAAGCAGGAAAAGGAAGGAGATGCCATCCAGTGCTGACAGAATCCTGCATCTTTGATGTTTCTTACATAACCCTCCAGCCTTTTAGCTTGTTTTATAAAAGatccattaaaaatgaaatgaaagtattTACAAAGTTTACATTGTGCCAAAATTGATTTCAATGGCACATCTACGACAATGTGTAGCCACCCAAAACGAATGAGAACTGCAATGGAACAATAATGGGAaggagggggggaaaaaaagttccAATATTTCCACATTGATCAGGCAGAGGAATCACAGCAGGAGGAAAAGGCTGGCTGGAGTCTCTGAGCAAGTCTCTTGTCGTTTTGGAGCACTgaagaaaaagggagagagtCAGTCTCTAAGAAGCACATGTTCCATGACAACAAATGAGAACGCCACTTGAGCCATTTTAGGGGTACATGAAAAATGCTGAGAAAACATCAAGTCCCGCTTTCATCACCAAAATCATAATCAATACCCAGATTGAGAGGAAAGGCCGCTTTTGCACACCTTCCATACATTATGGAGGCAGCCCTTTCCCTCCACAAAATCTACTTGGTCTATTcctccaaaacaaacaataaaaaaaaaaaaaaaaattccaaaaagcACCAGGGGATGTGTAATGATTGCTTCTGAAAACCAAGtagaaattaaaagtaaataaagggTAACAGCAGGTGACATGAGAAGGGCAAGATCTGGGAAAAACATTATTACTTTGAACAAAGTTCGACTGCTTGTTAAGGCACTTCATACAAATAAccaaataacatgaaaataaagagGTGCTGGATGGAAAAAGCTGGGTCTGAGGGCCAGTGGGTGATGTTCAGGTAGGTGAAAAGTAGTCGCATTTTCTCAATTAATAAATAGGATAATTAGCTTCCATCATCCTCTTCTACCCTTCTCTCTCAAGTGCTTTAGAATCTTCAGAATGTTAAATGACGCAGCAGTCCTTTTAAGGGCCATGACATTTTTCCTCcgttattgtcctgtttcaaAGAAATTCCTCATGGTGGCACAAAaaaggaagacaaaaaaaataaagagaagggACAAAAAtgtagagaaataaaaagaaagagtaaGGGGGTAGTGGCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120999 True 2667 lncRNA 0.40 2 20089591 20092328

Neighbor

gene id symbol gene type direction distance location
LOC113526513 cxcr5 coding downstream 35155 20051332 ~ 20054436 (-)
pik3c2a pik3c2a,LOC108264692 coding downstream 592598 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 756161 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1347867 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1565365 18282619 ~ 18524226 (-)
nectin1b nectin1 coding upstream 122814 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 270002 20362330 ~ 20377332 (-)
ccnp NA coding upstream 290482 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 329945 20422273 ~ 20453147 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding upstream 368015 20460343 ~ 20464685 (-)
G102147 NA non-coding downstream 89268 20000101 ~ 20000323 (-)
G102146 NA non-coding downstream 90410 19998963 ~ 19999181 (-)
G102129 cdon non-coding downstream 121814 19943711 ~ 19967777 (-)
G102082 NA non-coding downstream 234828 19854530 ~ 19854763 (-)
G101955 NA non-coding downstream 503752 19585640 ~ 19585839 (-)
G102225 NA non-coding upstream 656 20092984 ~ 20093802 (-)
G102270 NA non-coding upstream 152007 20244335 ~ 20290991 (-)
G102271 NA non-coding upstream 165004 20257332 ~ 20263140 (-)
G102272 NA non-coding upstream 189857 20282185 ~ 20356597 (-)
G102434 NA non-coding upstream 265887 20358215 ~ 20359541 (-)
LOC113527007 NA other downstream 109332 19980069 ~ 19980259 (-)
G101178 NA other downstream 1892785 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4732028 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5742583 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6527017 13550680 ~ 13562574 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 303538 20395866 ~ 20416574 (-)
G102566 NA other upstream 861274 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 903013 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2139120 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3498617 23590945 ~ 23610448 (-)

Expression


Co-expression Network