G102600 (LOC108264595)


Basic Information

Item Value
gene id G102600
gene name LOC108264595
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20995525 ~ 21003780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121483
GTACAGCGACAAAATCTGAATAGTAAAACcataaaatactgaaaaaatgaacaaattttatTAGCTGATAAGAAGCAAAAAATGGTCAGccatatataaataacataaatatcaAGTTTCACAGATTGTCACTGCAAATGTAAAACCTCAGAACACCAGAATAAGGCACAAGTGGTCCAAACAAGTAgtgatacaaaataaaattatttctaatctttattatatttaactgTTGCATAGTTTACACAGAGGCCCTACAGAAACAGTAGGCCTCAGATCGAAGATGTCTCCGGAAAAgtgatgtgattaaaaaaaaattaaaaaatacaaacgTGTGTAAGCACAGCTCCATACAGACTGACTGATATTGCACTGTGTTAAATGTCCAACGTCACCTTTATCTAATACCTTTAAATAATATGTTCACCCATAATGCACCCAAGAGCCAAAGACTGAACTGGAAAGAAAGTGAcaaatttctgtaaataatacTAAAAGAAGCCAAATTTATAATCTTAGAGTAAGGCACAAGTGGTCCAAACAGCCAACAAGTAGGAAAactaaaatgatttcattttagaTTTTCATAGTTCATAAGGTCATTCAGAAAAATTCTAGAAACCACACACTCCTGAAAAATTATAAAGAGAAGAAAGGAGGGAAAGTAAAAAATTCTCCACATTTCGGATATAAATATAACGCATGGAAGCAGAAATCCACTCTGACTGCCTGATATTTCAATTTGTTCTGGTTTCAAAAAACATTGGTATGTACCCAAAATGTACCTGTCCAATGTGGTCCAAGATAGCAGAAAAACAAACTTCAACAATTTATTGCTGGTTTTGGTtactagaagaaaaaaaaaacctaaaattgGTCCAGTTAACATGAAAATCTAGTAAAGAAAACCTTACCAGATGAAACAGTCCTTTGTTGTTCCCCTATAACTTTATCAATAATGCAAAATTACCATTGTAACATGCGTTACCATTGCACTGGTCTGCAAAATTACAAGTGAAGACCCCCACACACAGAATCTACACTTCCCTCATCCTCCGCTGCTCAGCGAACAGAGTGTCAGTCTGGAGGTGTCTATTTGCTAATGGAGTTGTAGGAGACACGAGCGCTTGGGTCCAGTGGCTTTGTGTCCGTCTCACACTCGTTAGGTTCCTCAGCagagttttctttctcttcttcacaTTCGTCGTCGCAGCTGGGCAAATGGAAAAATGCTGTCCATCCCTGAACATCAGCCATAACAGAGATCTTGTAGAGTGGTCGGAGTTTCTGATTGGGCTGCTCTCCTGGGACAAAGTCGCCTAACCCGATGGTGCAAAGGGAGATgaagcagaaataaaaagccTCCAGAAATGACCACGAGTCCTCAATGATGCTGAAAACAGTAGCTGGCACCAAAAAGAACAACACAATGACCACCAGGAGCAGGAGGACAAAGTGGATGGTGCTGGCAGTGTGAGGATGCCAGCCGAACCGCCGACGCCATGACGCCACCGGCCGTAGGTTCAGCGGCACCATGAGGCGCTGCACACATGCCGTCAGCACCAGCATGGTGAAGGGGACGCCGAATAAGGCATACACAATGGCGAACGCTTTCCCCACATCAGACAGCGGA

Function

NR:

description
PREDICTED: potassium channel subfamily K member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121483 True 1633 lncRNA 0.40 2 20995525 21003780

Neighbor

gene id symbol gene type direction distance location
LOC113526481 NA coding downstream 65575 20924978 ~ 20929950 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding downstream 150321 20820806 ~ 20845204 (-)
fbxo36a NA coding downstream 423096 20566740 ~ 20572429 (-)
zbtb38 LOC108264297 coding downstream 431444 20541643 ~ 20564081 (-)
rasa2 rasa2,LOC108264552 coding downstream 459503 20489540 ~ 20536022 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding upstream 9455 21013235 ~ 21020541 (-)
esrrd LOC108263916 coding upstream 124168 21127948 ~ 21137281 (-)
LOC113526809 ltbp4 coding upstream 145283 21149063 ~ 21249503 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding upstream 464194 21467974 ~ 21492481 (-)
ppfia1 ppfia1 coding upstream 491342 21495122 ~ 21574846 (-)
G102458 NA non-coding downstream 309340 20638871 ~ 20686185 (-)
G102472 NA non-coding downstream 414357 20578690 ~ 20581168 (-)
G102453 NA non-coding downstream 499224 20494257 ~ 20496301 (-)
G102449 NA non-coding downstream 516969 20478333 ~ 20478556 (-)
G102444 NA non-coding downstream 522780 20471871 ~ 20472745 (-)
G102691 shkbp1 non-coding upstream 119535 21123315 ~ 21124955 (-)
G102809 NA non-coding upstream 305523 21309303 ~ 21312468 (-)
G102808 NA non-coding upstream 314360 21318140 ~ 21319552 (-)
G102983 NA non-coding upstream 566651 21570431 ~ 21652774 (-)
G103099 NA non-coding upstream 791993 21795773 ~ 21796243 (-)
G102566 NA other downstream 28615 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 578951 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 1015266 19980069 ~ 19980259 (-)
G101178 NA other downstream 2798719 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5637962 15347166 ~ 15357563 (-)
si LOC108264758,LOC108431149 other upstream 1227668 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 2587165 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 2644904 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 2729090 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 3476522 24480302 ~ 24574675 (-)

Expression


Co-expression Network