G103702 (rps3,LOC107600794)


Basic Information

Item Value
gene id G103702
gene name rps3,LOC107600794
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23270144 ~ 23275282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122712
gattaaacccatttaattcaaGCAACCAGTCAAATAAGCAATATAGgctatttataataatcttataataactAGGATCTCAATAACATAACTGGTAAcagtacaagaaaaaaaaaaaacaaacaaacaaaaaaaaccccataaactccactttgagaaccactgatttaAAGGAACACAAGGGCAGTACACACTTTGTGAACTTATACAGAGTTCAATTCTAATTCGAAACCTACAGGGCTGACCGAATACACTAGATTACACAAATCTCAAAAAAGAGTGTTGAACACTGCATCAGTGTAAATCTCATAAGAGTGGTGAACACTGAACATTGCATTAGCAGGTCAGGAGCTTCGCCACGTGGTGTAGCACTTGTgtgaatttaaagaaaaaaaacctgctcaTGGTTAAATACAACAAACTCACCTGACTGCATATATAGCAATGAGCTGATCAgatgattttacacacacaatcttaTACAAATGAATAGAAGTAAAAAGTACCATTAAATTCAAAGTAAccatcaaaaacattttctagaATACACCATTTTGCCACACCTTAAAATGAGAATTAGGTCATTTCATATCATGTAAATTAATgaagacaaagaaacaaaggccataaatgtatttatccttttatttttgtacagaaAACCTCATCATCCAATGGTGAACACctagaagagagaaaaaagaaaaaaatgttaacacagGTTCTGTCAACTTTAGTGTTTTATCCAGTATTGGACATTATTACTGCATAGCCCTTCTCAGACAAATGCCTCAATGTCTTCAAGTGAAAGGGACCCTCTGCTCAAAGGGTCCGAGCTCAGAGGCACAGAACGTGACTCTGGGCACAGACACCTTCGAGCGAAGCACAATCCCATTCCGACTCGTCATCGTATCATCACTGAAGGGGGTGAGAGCTTATATGAAGCTGCTTGAGCTCCATTaataaactgcacacacaatCCATTCACATGCTGCACAGACCACAGATGCATATTCACACAGATCTCTACCCCAAACACCGGAGGGTCCTGACTTGATGGTGGCCAATTAAAATCTTCCATACTACCAAATGCACGTTATAGAAATACATCttaatatattttcagtgcACTTGATATTTTCACTGCATGTTAGTTTTAACACTGACTAATGGAGTCGGTttacaaatgtaataaaagtacAGAACTATCTGCAACAATGGTCTATAGCTAGAGGCCCTTTTTGTCAGGTTTACACACAGCACTCGAATTAGCAAACAAGTTATTAGTTAGGTACTGAATAAACTAAAAGCAAGTCAGACTGTTTCCTGCTATTTCAACTGCAGCATTAATGTTCACCTTTGCAAACCAAGAGTTGCTTTATGTTTTTGAACATCATGACTAAATTCTGGACCCACTCTGTCCCCCTTACCCTTTATGCTGTGGGTACAGGAGCTCCCTGGGGCATGACTGGGACTTCAGGCTTGGCCCCCTTCTGTTCAGACACAGGGGTGGTGGGGAGGATCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGAGGCTTCTTGGGGCCGATCTTGCCGCTGGGGTCCCAGGGAAGCATGATCTTAACCTTGATACCGAGCACACCtggacacagggacacacacacatcttaagCAAAACcaaatcacacaccaacatttcTTCTGCATATGGATTTtcccaacaaaaacaaaacctgacCAGGGAGATGCCGTTTGAAAGCCAATTTTTTGTCTGATTGTGCTTCTGATTAAACACCAGTACATTTGTGCTGTTGTATCAATACTTATAAACTCCCTTCTCAGACAAATGCCTCGATGTCTTCAACCGAAAGGAACACAGCACTCTGAGGAACTGAAGTCAGGGACACAGAACGTGACCACTAACCCAGAATCCAGAGAGTCAGCCAGCGTCCCGTTCCGACTCGTCATCGTATCATCACCGAAGGGGAATatcaaaaaaattacatttcatgttaACTATCCATTTAATAACCGAGATATTTAGGCACATGTATATATCACCGCACACTACACATGGATGGATATACACTTGCACGTGCACATTAAAGAAATAACTGGAATAGaagattaatttattaatttctcaTACCTAAAATGCATACAATCAGCCAAGATAAGTTTCACatctttagttttgtactgttGGTACGTAAAGCTTGCAGCGACCAGTTTAGCACCATGTAAACTGCACGCCTAAATCTCACTCACACCTTCTTGTTTGACTATACAATTTCTAGAGTCATAAAAAAGGagaataaacaaacatctccttccTGAACTTGATATTTGTCAGCGTGACACCAAACTATATGATGATGGTTGCTACTACTGATTTAAGCCAAGTgcctttttgtctgttttcaaAGATAAGTGCCTCTCATACTGTTCGAAAGTAGAAGTCTATTTGTAATTGCTTAATTTAACAAGTGAGATTTAAGCATGCAGACTGCGCAATGCCACGCTGCTGGTTAAAACCTTCAATTATTTACTAGCCtagtagctccagtgcaaagcTAAAGCTGTCATGGCTGAGCAACTGCATTTGAGGCAAGAGGAAaatgtgtaaactttttttcccccaaaacttGTCCTTAATGCTTGACATCAATGTCACATTTGGCTATACAACTGCATTTCCTTAAACAGTGAATGAGAACATGTGAGACTCAATacaaatacttttgtttttttttaaccacctgTTATTAGGCATTTCCTCATCCCTCACTCACCTTGGCGGAGCAGGACGTGGCGGACAGCGGTGTCCACGTAATAGTTGACGGGGTCTCCGCTGTGGATCATCAGACCGTCCACGAACTTCATGGACTTGGCCCTCTGACCCCTGAGCTTGCCGGACACGACCACCTCGCAGCCCTTGGCGCCACTCTCCATGATGAAGCGGAGAACACCATAGCAGGCCCTGAGGAAGACAATGACAAACCAGTCAGCATTGCCGCTTCAGATCAAGTGTGTTTCAAGCCAATCAATCACAacaatgctgatttttttttttttttgtaaactctTCTCAGACAAATGCCTCGATGTCTTCAACCGAAAGGAACACAGCACTCTGAGGAACTGAAGTCAGGGACACAGAACGTGACCACTAACCCAGAATCCAGAGAGTCAGCCAGCGTCCCGTTCCGACTCGTCATCGTATCATCACCGAAGAATAAGTAGCAGGAAATATTTTCTGGAAATTCGAGTGTTATTCTTGTGTGGCAAAAGGAGCTTGAAAGACTGAAGGGAGTGTATGGCGGCTTAAGATGCAAAAACGAGCCCGCCATACACTCGACCACCACATAACTAggaatactaataataaaaaaactaatatccCAGATACAACCGATTATAATAATTTGTCCACCCCAAGTGTGTAATGGTGCTTTAAATATTAGCATATATAATGACTTACCTGCGGACAGCCAGACCTCCGAGCAGCTTGTAGCGCAGAGATTCAGCCTGAGCGATGGCACACAAACCCCTGGTGGCCACCTTCTCAGCATAgagctaaaacaaaaacagcagtttAGTATGTGCACCCGAGGAACAGGAGACTTCTTTAGAATGGTGACAGCCTGGAAACCCGGTCTTACCTCCACGCTGCCCTCTGGGAACCCAAACCTCTTCTGAACAACAGCCGTCAGTTCCCTAATGCGACGGCCTTTCTCTCCCAGGACATTCTGGGTCTGGTGGCAAGAATGATGATCTCTGTCCTTGTTGGAGTGACCCGGACCTCCACACCGGAGTACCCATCCTCGGCAAGCTCTCGGGTCAGGAACTCATTCAGCTCGGCTTTGAAGATACCGTCTGAGACAAACTAAGGATGAAATCACAAACGTTAGGAAGCATGTCAATTAAATCTAAGAGATGATGATCTAATGTTAGACAGGCTACCTAGACATGTGAAATTACCCCATGTACCAATCTGATGCAAGTCTAAAGTGACAGATTTTTATTAGATATGCATGTACATGTGCTAATAAATGTGCTcagatttgacattttaaatCAGAGCCTTTTGTGAAGTTCattaaaacagctctgacattGGGATCATAAAGAAACAGGAAAGTGAGGACTGATTAATAGCtagaaaacacatttatctaGACAGCAGGCTATGAAGGGAAATGTCCTGACTGAGACAGGACATGCAACTAGTCACAAATTCACCACCCTCAGTTATTAAACCTTAAAACGGAGATTGTGAACaggcttaatttaaaaaaaaaaaaagtttaaaaaacaaacaaacaaaaaggctTCCTGCTGACTATACAAGTGCATTAGAGAGATAAGAATAACAGCTACCCAGTATGTAGTGTGCTGTATTACCATGAAATCATACGGGATTTATGCATAAAACTGACTGACTTAAGAGTTAAATAAGTATTCATATGAACAGCTTCTACACAATGActtagtttttaaataatgttaaaagaGGAGGGAAAATAAACAGCGATTGCTGTTCATAAGTACAAAGCAGGGATATGGTCCTAAATTAGCTctttagctagctggctaaaaaCCCCAGAGCTAAAGAAAATTAAGAGCCAAAACATAAGAGttaaaaagtaaagaataaagtCACACATGAAGAAACTATGCGCCAGTTTCTGACTGAGTTCAGTGACCGGTTAGAGACATCAGCTCCTGCCATGTTTCGCATCAGAGCCGCAATGAGTCGCATCCAAGGCAATCcggcaataaaataaacataaaacaacTATCTTCACGCAAACAATTATAATTAAACACCACTTCAATCATCTAAAACCATTATTACTACGTATAAACCCTAACTTTGACGGATAATCTTATAAAAATCTCGCTAACCTTTCTCTTCTTAGAAATTTGCACCGCCATCTTGCCGAAGGCCGCAGACAGGAAAGGAATGTTGACCAAAGCGGAAATCAATTTATG

Function

symbol description
rps3 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in mitochondrial inner membrane; ribosome; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleus. Orthologous to human RPS3 (ribosomal protein S3).

NR:

description
PREDICTED: 40S ribosomal protein S3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122712 True 4986 lncRNA 0.41 2 23270144 23275282

Neighbor

gene id symbol gene type direction distance location
LOC113526825 LOC108263933 coding downstream 107835 23158732 ~ 23162309 (-)
LOC113526884 NA coding downstream 116495 23150108 ~ 23153649 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 928703 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1605817 21641638 ~ 21664327 (-)
LOC113526476 LOC108263963 coding downstream 1635587 21623853 ~ 21634557 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 22073 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 58895 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 180411 23455693 ~ 23504297 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding upstream 238111 23513393 ~ 23535680 (-)
dcun1d5 dcun1d5,LOC107712802 coding upstream 272110 23547392 ~ 23557534 (-)
G103600 NA non-coding downstream 7061 23262807 ~ 23263083 (-)
G103576 NA non-coding downstream 10956 23219022 ~ 23259188 (-)
G103436 NA non-coding downstream 334098 22928169 ~ 22936046 (-)
G103410 NA non-coding downstream 386991 22865924 ~ 22883153 (-)
G103235 NA non-coding downstream 933441 22335946 ~ 22336703 (-)
G103719 NA non-coding upstream 46381 23321663 ~ 23323412 (-)
G103727 NA non-coding upstream 54394 23329676 ~ 23330101 (-)
G103817 NA non-coding upstream 236875 23512157 ~ 23513328 (-)
G103820 NA non-coding upstream 297307 23572589 ~ 23575679 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 1139618 24414900 ~ 24464578 (-)
si LOC108264758,LOC108431149 other downstream 963375 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2257044 20995341 ~ 21013100 (-)
G102566 NA other downstream 2303234 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2853570 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3289885 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 315663 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 373402 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 457588 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1205020 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1348234 24623516 ~ 24711368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G13045 rps3 non-coding CM030122.1 CM030122.1 17241944 ~ 17246330 (-)