G103719


Basic Information

Item Value
gene id G103719
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23321663 ~ 23323412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122733
TTCAGTTTTTTGTTGACCATCACGTACAGATGCTCCTGTGGATAAGCACTCAGGTCTCGGGAGATGGCGTGCAGGCTGATGGAGGGATATTCCAGTGAAAAACCCATTCCTGAGCCATTGAACCACGACAGGCACCTGACAAGAAAGAATATTAATTCTGTTACTGGTTCTTATACTACTTTTAAAATTTCTCACTCCCATTCTACCGTTATTACAGCTAAAGTCAAACGGACACTCTCAAAAACCTAATTCACACAATGTTCTCCTTATCCTAAATAATCCTAGCCAAGACATGCTTGGTGTGGAACATCTGCTACTCTCATTTTGCACTGTGCTAACAAGTAAGGAAACATTATAATCCCCAGAATATCATTGTCCAAATCACGTCTAAAGCATCATACACTCACTTCAACAAACCCTATCGACTCTTCCAGTAATCTTACCCAAGGCAttttttccactgcacattcaaaaacaaaaacccaaacAGGAACCAACTGAACTAATGCagtaatgacaataaaagcaaGTGCATCATCATTACCTTCAAGTTGATAAGAGTTTCTGagaaattatatatttgtgtagGTTGGAAAGTAAAGTAGTGCAACACTGCCCacttttttatgtaaatgtttgctttctgtcattctgtgTTTGCGATGTAGCACATTGTGatattgtgccctgtgatgaattggcaccctgtccagcgtgtccccctgggataggctccaggcttcccacaaccatgtgtaggataagcggtacagagaatggatagatgaataataataataataataataataataataataatacactttcTGATTTCAGCTATTAAACAGATTCAGAGAGTGGCATAATGTTACACCCATAGTATACAACTATAAAATCGacatattctaatattttacaaaacatttaagGTGAGTGTGTAGTTTAGACCTTCAGCTGGCATGATGCTAATCTGGTGTCCATAAGCCTGCCTTgtttgttagcaacattagcttcATATCATCAGTGTAAACctgaagaagcaaacttcacaAGTGGAATAAATCTTGGCTGACTGACTACATTTGAGGTAAACtgtgtaaagtttatttttagtcaAACTATACCTTTAAAGAGCTATGTTAAGCTGGAGCCGAAGAACATTAATGCCTGTAGCAGACGTGtgtcattctcacacacactaacacacatacataataaacaacaataaagaaaacacacacacacacacacacagaataaaggCTAATGTTGCTGTTACTTACGATTCGGCCACATACAGCGTCCCTGTGCCGAGTCCCTTACCGTCTAAAACCGCTGTAGTCTCGGCCTGCTGATGCCGAACTCCCTCAGCAGGAGGAGGCAaactttttaacaaaaccataTTTTCACAAACTGACTAAAACACTTCACCTGTCACCTTATTTATTTCCTAAAGCTAGCTACCTCGCCTCAGTGGTCTCAGCGGCTAAACAACAACAAGATGCTAGCTAACAACAACAGAGCTGCTAGCCTGAAATAGCAACTGACGTATTTTTAGCTAAATATAAAAACGAAtacagcagctttacacaatAAACATTTGCACAGTATAGtgtaaactgattaaaaagcGAACAAACGCTTTGGAAACAAACTATTTTCTGCTTAAAGCACCACACTGGTACGCGTTACTTCGTCGTTTCCATGCGCGCCACATGAGCTCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122733 True 1730 lncRNA 0.39 2 23321663 23323412

Neighbor

gene id symbol gene type direction distance location
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding downstream 22653 23297355 ~ 23299010 (-)
LOC113526825 LOC108263933 coding downstream 159354 23158732 ~ 23162309 (-)
LOC113526884 NA coding downstream 168014 23150108 ~ 23153649 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding downstream 980222 22336760 ~ 22341441 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding downstream 1657336 21641638 ~ 21664327 (-)
aqp11 aqp11 coding upstream 10765 23334177 ~ 23340381 (-)
myo7aa myo7a,myo7aa coding upstream 132281 23455693 ~ 23504297 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding upstream 189981 23513393 ~ 23535680 (-)
dcun1d5 dcun1d5,LOC107712802 coding upstream 223980 23547392 ~ 23557534 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding upstream 235711 23559123 ~ 23571022 (-)
G103702 rps3,LOC107600794 non-coding downstream 46381 23270144 ~ 23275282 (-)
G103600 NA non-coding downstream 58580 23262807 ~ 23263083 (-)
G103576 NA non-coding downstream 62475 23219022 ~ 23259188 (-)
G103436 NA non-coding downstream 385617 22928169 ~ 22936046 (-)
G103410 NA non-coding downstream 438510 22865924 ~ 22883153 (-)
G103727 NA non-coding upstream 6264 23329676 ~ 23330101 (-)
G103817 NA non-coding upstream 188745 23512157 ~ 23513328 (-)
G103820 NA non-coding upstream 249177 23572589 ~ 23575679 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 1091488 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 1210325 24533737 ~ 24534419 (-)
si LOC108264758,LOC108431149 other downstream 1014894 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2308563 20995341 ~ 21013100 (-)
G102566 NA other downstream 2354753 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 2905089 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3341404 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 267533 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 325272 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 409458 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 1156890 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1300104 24623516 ~ 24711368 (-)

Expression


Co-expression Network