G103820


Basic Information

Item Value
gene id G103820
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23572589 ~ 23575679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122848
GTGTggaaagcaaaaacaaaaacaaaaaaaaccatcattTTACAAATTGCTGCGGTCCAATACATAAACCTGACTTTAAAGACCTTCATTTATTTCAGCCAACaaaacaggtaaaaaaaaaaaaaaaaagcaaaaaacactgGCAGGAATGCATGAAAGGTGCATagctccacataatctacaTCACTGTATTGCAGTTCTGGACAACTCTCTTAACTCTACTTAAGTTACTGTGACCTAAATTGAGACCTGATATTTTGGCAGCCTTCTGAGTTAAAACATTTCGTGGTGTACAGAAACAGTccttcagggaaaaaaagaacagctgtATGAAGAATCACTGTAGTAAACGTCAGCGGCAGAAAGGTTTGCAATAATAATGGTGTTCCAGCAGCAGTCTTCATCAGACTGGAATGTTTGGTAAGATATGGCTTAGGTTTTTCCTCCTACATTTTCCATATCTCCACCATTCATGTAAGGCACATGAGCTCATAGTATTGCAGTGACAGCTATGGATAGTTTAAATAAGACATGAAGAGCTGAGAGGTGATCCTCATCCTTGCCAGCAGagtgagaaaagagaagagaggaatgTTGagcaatgatgatgatgatgatgatgatggtggtgatgatggtccGGTTGTCTTCTTACATCCCCATTCGGATGCTCTGAATAATCTGGAAAATGGCTGATCCACACACTACAAAGACGAATAAGGCCAGGAGCCAGGGTCCTACCGCCGCCTTTTCGTCTTGTGTGCCTCTTGATGATTTGGCCACGTTCCCTCgctgtgtgatgtttttgcTGTGCTTCTCGTTCGCCATGCGTATCCTCTGCTTCGCGACCATGTTTTCAATATTAACCTACAGCGACTAAATATAAACTTGTggctaaatttaatttaaaaaataaaacctaaatatTCCAGTCTTGATGGAAAGCTCACCGGATCTTCGTTGTACTCCGAGAGATGTCTACGTACGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122848 True 989 lncRNA 0.41 3 23572589 23575679

Neighbor

gene id symbol gene type direction distance location
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding downstream 1567 23559123 ~ 23571022 (-)
dcun1d5 dcun1d5,LOC107712802 coding downstream 15055 23547392 ~ 23557534 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding downstream 36909 23513393 ~ 23535680 (-)
myo7aa myo7a,myo7aa coding downstream 68292 23455693 ~ 23504297 (-)
aqp11 aqp11 coding downstream 232208 23334177 ~ 23340381 (-)
mtif2 mtif2 coding upstream 2360 23578039 ~ 23582080 (-)
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding upstream 39692 23615371 ~ 23632367 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding upstream 58398 23634077 ~ 23678458 (-)
abcc5 abcc5,LOC107670605,LOC107671530 coding upstream 126105 23701784 ~ 23731415 (-)
depdc7a depdc7,LOC107576633,LOC107758055 coding upstream 189858 23765537 ~ 23786329 (-)
G103817 NA non-coding downstream 59261 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 242488 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 249177 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 297307 23270144 ~ 23275282 (-)
G103600 NA non-coding downstream 309506 23262807 ~ 23263083 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 839221 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 958058 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1538298 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1616378 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 1663431 25239110 ~ 25241770 (-)
si LOC108264758,LOC108431149 other downstream 1265820 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2559489 20995341 ~ 21013100 (-)
G102566 NA other downstream 2605679 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3156015 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3592330 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 15266 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 73005 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 157191 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 904623 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1047837 24623516 ~ 24711368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location