G104291 (six9,LOC108263903,LOC108433455,LOC107554476)


Basic Information

Item Value
gene id G104291
gene name six9,LOC108263903,LOC108433455,LOC107554476
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24414900 ~ 24464578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123411
CACAGTAATCAATACACTACAGATACAGGTAATAGAGATTAGGTAGAAACCGCTGGAGTATTTCTTTAACATCAGACATATTTTTAGTCTAGTGGTAGTAACTGTTGAACCACTCGTCTTAGCTTCATCACTCCTACTTTTGTCATATATAAGGACCTTTATATGAAGACCTGAATTAGCAGATCAAGTCTTCCTACCTTGAAGCAGTAGCTTGTCTCTTCTCCATCCCAGATGGTTCGAGGCAGGGGGAACTTACGCCGTATGCGGTATTTGCCCACAGCTCCAAGAGGGCGCCCTCGCTGCAGCTCAGCCTCCAGGTAGCGTGCCCGGAGCCAGAGCTGCTGGAGAAGTGAGTGACTGCGTGGGGAGAACATGTTGCCCTCGATGAGAGCGTAGAGCTCGCTGAACCGACCCTGGTGGAAGGCCACAGCTGCCCGTGCCTTCAACACGCTCTCCACACTGTGCTGTGGGCCCAGGTACGAGGACGTAGAGTATGTGGAGAGAGAAGGTACAGAACGAAGGAAGGATGATAGGCGGTCAATACACCCACTCTGAAGaagaacttcacacacacacgccacctGttcccaccca

Function

symbol description
six9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SIX2 (SIX homeobox 2).

NR:

description
PREDICTED: homeobox protein six1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123411 True 594 lncRNA 0.51 2 24414900 24464578

Neighbor

gene id symbol gene type direction distance location
arfgap2 arfgap2 coding downstream 47641 24349599 ~ 24367259 (-)
large2 large2,gyltl1b,LOC107670096,LOC107554994,LOC107602128,LOC107670633 coding downstream 145305 24135378 ~ 24269595 (-)
cngb1a LOC108264061,LOC107717637 coding downstream 440712 23932898 ~ 23974188 (-)
kifc3 kifc3 coding downstream 487963 23877707 ~ 23926937 (-)
eif3m eif3m coding downstream 571428 23835172 ~ 23843472 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding upstream 5389 24469967 ~ 24477972 (-)
c6h19orf47 c4h19orf47 coding upstream 202483 24667061 ~ 24674856 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding upstream 216189 24680767 ~ 24686250 (-)
capn12 LOC108264620,LOC108433431 coding upstream 240426 24705004 ~ 24727022 (-)
znf296 LOC108264426 coding upstream 274513 24739091 ~ 24750597 (-)
G103820 NA non-coding downstream 839221 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 901572 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1084799 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 1091488 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 1139618 23270144 ~ 23275282 (-)
G104320 NA non-coding upstream 69159 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 649399 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 727479 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 774532 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 778894 25243472 ~ 25245244 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 676121 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 715193 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 804452 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 2108131 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 3401800 20995341 ~ 21013100 (-)
sipa1l3 sipa1l3 other upstream 15724 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 158938 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 167061 24631639 ~ 24661978 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 287075 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 579208 25043786 ~ 25079512 (-)

Expression


Co-expression Network