G104320


Basic Information

Item Value
gene id G104320
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24533737 ~ 24534419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123452
gtctctatacacatttaatgcgAGGTTGTATATGGCAGGATAATACCAAGATAAAACCACAGgtttaagtttttcttccatttatgtgcatcaaaaaataaaataggaacTAATTACGGGTAGGAAATAAAGGTGTGAGTGGGGAACAGAGGAGACGTTGGCATAGTATTGTTCTGAGGACTCATTCAAGTccttttgtgtgtatttatcaaTTTACTGCTTCATACCTAATTTCCATAGAACTGACAAACTGAATGATGCTTCACTGCCGTCACTGAAATCGCGGCTCTGTatcaggccacgcctccttcactgagactgacaggcagagagaccacgcctctttcagtgagactgacaggcacagaggccacgcctccttcactgagactgacaggcagagagaccacgcctctttcagtgagactgacaggcacagaggccacgcctctttcactgagactgacaggcacagaggccacgcctctttcactgagactgacaggcacagaggccacgcctctttcactgagactgataggcacagaggccacgcctctttcactgatactgacaggcacagaggccacgcctctttcactgatactgacaggcacagaggccacgcctctttcactgagactgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123452 True 647 lncRNA 0.48 2 24533737 24534419

Neighbor

gene id symbol gene type direction distance location
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding downstream 55765 24469967 ~ 24477972 (-)
tbcb tbcb,LOC107687357,LOC107662130,LOC107560142 coding downstream 92123 24436290 ~ 24441614 (-)
tmem123 NA coding downstream 100470 24427587 ~ 24433267 (-)
arfgap2 arfgap2 coding downstream 166478 24349599 ~ 24367259 (-)
large2 large2,gyltl1b,LOC107670096,LOC107554994,LOC107602128,LOC107670633 coding downstream 264142 24135378 ~ 24269595 (-)
c6h19orf47 c4h19orf47 coding upstream 132642 24667061 ~ 24674856 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding upstream 146348 24680767 ~ 24686250 (-)
capn12 LOC108264620,LOC108433431 coding upstream 170585 24705004 ~ 24727022 (-)
znf296 LOC108264426 coding upstream 204672 24739091 ~ 24750597 (-)
siae siae coding upstream 233156 24767575 ~ 24776782 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 69159 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 958058 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1020409 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1203636 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 1210325 23321663 ~ 23323412 (-)
G104694 hnrnpul1 non-coding upstream 579558 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 657638 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 704691 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 709053 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 1298860 25833279 ~ 25836038 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 794958 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 834030 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 923289 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 2226968 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 3520637 20995341 ~ 21013100 (-)
G104473 map3k10 other upstream 89097 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 97220 24631639 ~ 24661978 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 217234 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 509367 25043786 ~ 25079512 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 850906 25385325 ~ 25548928 (-)

Expression


Co-expression Network