G106713


Basic Information

Item Value
gene id G106713
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28764739 ~ 28779018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126180
attaaaaattaaatcccaacttttgactggtagcgtgtatatatatttccacTGTGGTTGactgtgtattttttatgtcGTTGTATAACGTTGTGTAGATTAAGAATCTGGTTTAAGATTAAATTCAAGGCTTCATTAACTACAAATTTGACTCTCAGATGAATGTAATATTCAGGTTGTGTGCTAGAAAAATGCAAGCTAAAGAAGAACAAATAATGTTAAGGGATGTATTTGTATCCAGGcattgaaaatgtaaatgattagcttttttttttttactcacaataCACGACAAGCTCACGTTACACCATGCTGCGTTTCCAacgaccttttttttttcaatctgtaACAGCAATGTATGTCCTTTATGATTGTAAACATCATGTCTGcaacaagtaaaaaaaagtcactatGCTATTATGTAACATTAGCAGTGCAGTGATGTTTGGGATTTTCGGACAGCCGTGCACATTGCACATAGATTTAGTGAAacaccatgtcacatgacctgctgAGAGCCAATGATATGTAGACTGTATGTTATGATAGACATATGATAAGCAGATGAGACTACTTGTTCTTTTAATGGCAGTATAGATGAAACATAGCCATATGCCACTGAAAAGtgttagaatatttttttttatttctggaagtttatttaaaatacatatatataaatatatagttttagGGCAAAAGCTTTAAAGCTCCAAGCGTCTTTAGATTTGCTCTGTTCATTGATTTAGATCTATGCAAATCCTGTCTTTCCATTCTGTGTCAGTGTTCCAAGGTGTTggtcattttgttttaaatgaagctagtaAAAATGATGTATTCTCACTGTTTAGCATGTCtgacagcat

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126180 True 866 lncRNA 0.33 2 28764739 28779018

Neighbor

gene id symbol gene type direction distance location
gse1 gse1 coding downstream 52804 28467758 ~ 28711935 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding downstream 312424 28448739 ~ 28452315 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding downstream 317801 28423797 ~ 28446938 (-)
irf8 irf8 coding downstream 341754 28415135 ~ 28422985 (-)
foxf1 foxf1 coding downstream 531352 28229438 ~ 28233387 (-)
atmin atmin coding upstream 3006 28782024 ~ 28790810 (-)
cenpn cenpn coding upstream 12773 28791791 ~ 28799363 (-)
LOC113526432 cdyl2,LOC106562298 coding upstream 29089 28808107 ~ 28852636 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding upstream 413363 29192381 ~ 29205443 (-)
ppfibp2a LOC108264606,LOC108434021 coding upstream 515868 29294886 ~ 29330953 (-)
G106705 NA non-coding downstream 3002 28761518 ~ 28761737 (-)
G106682 NA non-coding downstream 55169 28707899 ~ 28709570 (-)
G106681 NA non-coding downstream 56997 28707130 ~ 28707742 (-)
G106678 NA non-coding downstream 66942 28695559 ~ 28697797 (-)
G106676 NA non-coding downstream 74765 28689455 ~ 28689974 (-)
G106772 NA non-coding upstream 26015 28805033 ~ 28805430 (-)
G106951 NA non-coding upstream 422989 29202007 ~ 29202844 (-)
LOC113526826 NA non-coding upstream 494059 29273077 ~ 29280183 (-)
G107193 NA non-coding upstream 901245 29680263 ~ 29707900 (-)
G107191 NA non-coding upstream 945096 29724114 ~ 29724377 (-)
si:dkey-151j17.4 NA other downstream 1604640 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 2156400 26569085 ~ 26608339 (-)
G105376 NA other downstream 2523734 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 3215811 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 3685227 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 841781 29620799 ~ 29714001 (-)
G107525 NA other upstream 1564513 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1949026 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2006575 30785593 ~ 30849697 (-)
G107803 NA other upstream 2037561 30816579 ~ 30820422 (-)

Expression


Co-expression Network