G107191


Basic Information

Item Value
gene id G107191
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29724114 ~ 29724377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126702
tatagatgtttttgtattattattattattattttttttattattattattattattcgttTTATTTTGACCTAGGGTTCTTCCCCAGCAGAAATGATGTTGACCCTTCTGCAGGGTTTTCACCTGCGTGTCTGTACAGTAAATTAATACATTCCATACGTTTACAAGTATGTACcgctgaccacacacacacacacacacacaaggatgcaCTACATACTTCAATCAGACAGCGTgga

Function

NR:

description
PREDICTED: neutral alpha-glucosidase AB

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126702 True 239 lncRNA 0.35 2 29724114 29724377

Neighbor

gene id symbol gene type direction distance location
kiaa1549lb LOC108264854,LOC108433503 coding downstream 66305 29599585 ~ 29657809 (-)
spon1a spon1,spon1a,LOC107741890 coding downstream 244682 29398604 ~ 29479432 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding downstream 354563 29345335 ~ 29369551 (-)
ppfibp2a LOC108264606,LOC108434021 coding downstream 393161 29294886 ~ 29330953 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding downstream 518671 29192381 ~ 29205443 (-)
lrch3 lrch3,LOC103027580 coding upstream 2713 29727090 ~ 29766747 (-)
luzp2 luzp2,LOC107746562,LOC107739427,LOC107656854 coding upstream 247090 29971467 ~ 30064366 (-)
tspan4a tspan4,LOC106561924 coding upstream 412634 30137011 ~ 30256084 (-)
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding upstream 631144 30355521 ~ 30359530 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding upstream 702803 30427180 ~ 30433055 (-)
G107193 NA non-coding downstream 16214 29680263 ~ 29707900 (-)
LOC113526826 NA non-coding downstream 443931 29273077 ~ 29280183 (-)
G106951 NA non-coding downstream 521270 29202007 ~ 29202844 (-)
G106772 NA non-coding downstream 918684 28805033 ~ 28805430 (-)
G106713 NA non-coding downstream 945096 28764739 ~ 28779018 (-)
G107210 NA non-coding upstream 40999 29765376 ~ 29844857 (-)
G107217 NA non-coding upstream 198365 29922742 ~ 29923193 (-)
G107510 NA non-coding upstream 585470 30309847 ~ 30311846 (-)
G107532 NA non-coding upstream 639250 30363627 ~ 30391458 (-)
G107533 NA non-coding upstream 643961 30368338 ~ 30369188 (-)
hipk3b hipk3,LOC108264637 other downstream 10113 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 2564015 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3115775 26569085 ~ 26608339 (-)
G105376 NA other downstream 3483109 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 4175186 25385325 ~ 25548928 (-)
G107525 NA other upstream 619154 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1003667 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 1061216 30785593 ~ 30849697 (-)
G107803 NA other upstream 1092202 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 1194807 30919184 ~ 30989204 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G237303 NA non-coding CI01000054 null 12358300 ~ 12360324 (-)