G107536


Basic Information

Item Value
gene id G107536
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30368887 ~ 30406964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127088
gtgtgtgtgtgtgtgtgtgtgtgtatacctctcGCAGTGAGGTGGTCTCTCTGATGAAGAACATGTTGATGATGCCGaggtattttattattttggttcCAGGAATAAAAGACAGCGGCGTCATTTTAACCACAGTGACGGAACCTCCGGGGTACGAACGACTCGACCTCAGAGAGCGAGAACGACCTTCTGGCAACGGACTGGACTTCTCCAGAGaggacactgagagagagagagagagagagagagagagggagagagagg

Function

NR:

description
PREDICTED: protocadherin-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127088 True 264 lncRNA 0.50 2 30368887 30406964

Neighbor

gene id symbol gene type direction distance location
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding downstream 9357 30355521 ~ 30359530 (-)
tspan4a tspan4,LOC106561924 coding downstream 112803 30137011 ~ 30256084 (-)
luzp2 luzp2,LOC107746562,LOC107739427,LOC107656854 coding downstream 304521 29971467 ~ 30064366 (-)
lrch3 lrch3,LOC103027580 coding downstream 602140 29727090 ~ 29766747 (-)
kiaa1549lb LOC108264854,LOC108433503 coding downstream 711078 29599585 ~ 29657809 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding upstream 20216 30427180 ~ 30433055 (-)
adm2b LOC108264181 coding upstream 30065 30437029 ~ 30444319 (-)
LOC113526499 LOC108264175 coding upstream 45743 30452707 ~ 30464074 (-)
ppp6r2b ppp6r2 coding upstream 62996 30469960 ~ 30489913 (-)
LOC117597520 LOC108264051 coding upstream 92901 30499865 ~ 30514364 (-)
G107510 NA non-coding downstream 57041 30309847 ~ 30311846 (-)
G107217 NA non-coding downstream 445694 29922742 ~ 29923193 (-)
G107210 NA non-coding downstream 524030 29765376 ~ 29844857 (-)
G107191 NA non-coding downstream 644510 29724114 ~ 29724377 (-)
G107193 NA non-coding downstream 660987 29680263 ~ 29707900 (-)
G107574 NA non-coding upstream 14288 30421252 ~ 30423338 (-)
G107550 NA non-coding upstream 36559 30443523 ~ 30469903 (-)
LOC113526678 NA non-coding upstream 307154 30714118 ~ 30715453 (-)
G107800 NA non-coding upstream 404083 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 413745 30820709 ~ 30822357 (-)
G107525 NA other downstream 24011 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 654886 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3208788 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3760548 26569085 ~ 26608339 (-)
G105376 NA other downstream 4127882 26239330 ~ 26241005 (-)
bbs10 bbs10 other upstream 321080 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 378629 30785593 ~ 30849697 (-)
G107803 NA other upstream 409615 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 512220 30919184 ~ 30989204 (-)

Expression


Co-expression Network