LOC113524890 (LOC108264167)


Basic Information

Item Value
gene id LOC113524890
gene name LOC108264167
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30919184 ~ 30989204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127479
GAAGTCTGAATTGcgtctgtttagaacacattaccTTCTGAATGATGTAACATCAAACACgttaaaaatctgatttgagCTGCTTGTCTGAACAAAGAcgatgtctctgtgtgtgtgctgtcctGCTCACGGCTCGTCCAGCTTCCTGCTCTGTGCTGTAAAAATGACTGCAGCTCTATTCGTCTCAGTCTCTATTTGTCTGCCTTGTTgtgtacttcctgttcctgtttcgcaccttcttcttcctctcagtAGCGTCAGGTCACTTCAGTGGAAACATGGAGCTTCTCGATAAAGGACACTAGACGCTTTGATGGACTTCAACTTGAAAAGAAGCCACACGTCAAGTTCACTATTCACAGATAATCTTCCAGTGGATGTGCAATTACAGAAAAGACTGGAACACAAGCACTTCTCACCagaaaatattttagtaaaCCTGACACTAATTTTGAGTAACTATCCTATTGTTTGAATGTATtcgtgttattattattattattattattattattatttatggtgTTATGTTAATTTACCTTGCAGTCAAAGAAAACGTCACAGTTGCTAAACAAATACTATCGTAAAGTAAATCTAATTTAAGAGAGcatatatatctgtatgtgtatctatttaaataataaatacatatttaatctTGACAAATATTCCAGATCCTCACAAATACACTGAAGGTCATGTGTTCATTTCTGTATGAAACCGAGTCGTCGAATCTTCGTAGTTTCCCGTAATGTCCAGCTATAAAACAATGACCGCTGTCTCAGCATGTCGAGTTTAGCTACAATATCACACAAGCGTACAAGTATCTGTTCCGCCAAACGCAGTCCTGAAATTGTGTTacagtgaaacagtgaaacagtgaaacagtTCTCATCAAATCGTACatctgtctttaaaaaaaaaaaaaaagtgaaatatttcaagtggaaaaaaagtCGAACTCCCCGCTGGTGCAGGATGTTCAGGTCATTAAAATGTCCGGATGATTTCCTGATTAACGCTTCACCACTGCGATGCCTCCGAGCTGCTTTTACACAACCGTCTGTGGAAATGATGTCTAATGTCTGAAGATGtgaaatgcagaaaataaaaataaacagaaaactgatcacac
>XM_034305388.1
gagagacagaggaaaggaGAGACGCAGCTACAAAACCAGGGTATTTTGCCGGCGAGTGAAAAGTTTATGCTCGTTGCTCGGGTTTCCTCTGCTGTCCGGATCAGGCTGGTCAGGAAGGCAGCAGAGCTCCAGCACACAGAGGAACACCGGTGGATATTTTTTATGCAAAGCTGACAacaggatgagtgtgtgagcacACAAGGTCAGCCGTCTGTCCAtccgcctgtctgtctgtccatccatcatccctccatcctcgGCCTCAGCATGAAGTCGAGCCCCGCGCTGCCCCACGACCTCCGACACACACCCTGAGCGAGACACAGAGCTGAGCCACAGCGCTGACGAGTCCACGAGAGGCGAAGGTGTGTAACGCTGGAGCTCAAGGACAAACCATGGACTCTGCAGACCAACCACCACACCTGGGCGTCCAAAATGTTCCTTGCTAGTCTTCTGGTTCTGATGACCCTGCTGCTACCTCCAGCCTTGTCAGGTCACCAGGGGGATTCCGCTCACTCTGATGGGAACCCAGGAATCTCTCTAGAGCCCAGTTTGGCCCAGACCATCCAGAACCTTCTCTTGACCCGACTGGGCCTACAGTCCTCTCCTAACCCTCGCCCAGGAGCAGTGGTACCTCAGTATCTCCTGGACCTCTATCGCTTCCACACACAGCAGTACCACCTAGTAGAAGATCCAGATTTCAGCTTTCCTGTGGAGCATGTACAAGGCGCTAACACGGTCCGCAGCTTCCACCATGCAGTGTCTTCAGACCTTCACAGCCCTGTTGAGAAGAGTGACAGCATCCATATAGCTTTTAACCTGTCCTCTATTCCTTCCTATGAGAATGTGGTCTCAGCAGAGCTGCGTTTTCTGCGTGGAGGAACACACAGGGGTTCAAAACCTCACACTGTCAGCCTGTATGCCTCTGGTGGCAACACTGAGCCCAAACTTCTCCATTCACGACAGCTAGTTAGAGAGCCCTCGGGGTCTTGGGAGGCCTTTCCTCTGAATGCAGAACTGTTTCAGCAGTTGTCCGATGCAGGGAAAGTGGCCTTTATCTTGGAAGTGACCTCAGATAATAGCAGTAACACTGTGGAGGACATGGACTCAGAGGGACACTTGAGAGTGCGCAGGTCTGCAGGTGAAGATGACTACAGCTGGGCACGGCAGAGACCACTCCTGGTCACTTACAGCCATGATGGGCGCAGTGAACCTCTCATTCCCTTCGGAAAGAAGAAAACCCCCAGGGGTAGGAGGGGAGGTAACAGGGCTAAAAACCTCAGAGGTCAGGGGTCACAGGTAAGCTGGCGTGATGTGTGGACAGACAGGCGGGTGAAGCGGAATAACGGTGGTCGAGCAGCTAAGCTGAAACGCCTGTCTCGCTCTCGATGCCGCCGCCATCCCCTCTACGTGGACTTCAAAGACGTCGGGTGGAACAAATGGATCGTAGCACCGACTGGTTATGACGCCTTCTTCTGTCTGGGTGAGTGCCGCTTTCCCCTCGCCGACCACATGAACTCGTCCAGCCACGCCATGGTGCAGACACTGCTGAACTCGGTTAATGGAGCTGTGCCTCGAGCCTGCTGTGTGCCCACGGCCCTCAGTCCCATCGCACTCCTTTATCTGGACCAGGAAGATCACGTGGTGCTGAAAAACTATCAGGATATGGTAGTGGAGGGCTGCGGCTGCCGGTAGCAAGGGATAGATAAAAAGGCAAAAAGCATGAAAACCTGGAAGAGCaagcagatgaaaaaaaaagaaatatcacaTTCTATAAATCCTTAAAGGAACCTTTAGGGACTTTCCCACAAACCTCTAGCGCCAAGCTTTAAATTCCTGTCTTGTAGTGGTGCATTGCTTTGTTCACAAAGCAGcgcaaatctgatttatttcttaaatcCAATTTTTAGATTCTCAGGGCTGAATATATTTATGTGCGCTCGCAATGCATCGAAGTTCATTTTAAAAGGCTGTAGCTAATCACTAATCAAATCGCTAATCAGTGTGCCTGGGACGATAATATGTAATCAGTCCCACTTCCAAAAATCCCGCCCTCGTTACACAATCCGCCCAAATTCCCAAAAATCCAGTTTTAATATACAAAcaccatttgttttttttttaataatcccACACTTGTGTTGTATCTTGACTTGCCTTCATGATCGCATTAGTCTATGTTTTTGTTCTCGATTCTAATTTCTAATCTCAACAAGCGATCCACACAAAATTCCTCCCAAAAATAAAAAcgaaattaatttaattcaattcacttttatttgtacagcacgATTTTAACAGTAgacctttacagaaatgtagatTTATACTGAGATAATCAGAAACCTTCAGCAGTCACATACACACCTTCAAAACACTTACAAACGGGTGTAACACATCGCCACTATCCCTATCTGTATCTGggtttaaacccaaagtgggtgtggcctaaagaGAAaggtattttttctttttttttttttgaactctAGCACTCCGCCCTAAAAAACACTGGAACAGTGGTGTGTGAATTGCGGCTCTGATGCTTCCTCAACCTAATCGCTCTTgactagagatgtgtgtgtggggctgctTTTATAATCCCACTCACAGCgttagcatttttgtttttttttgtagcctgCCATATCTTCTAACCAgggctgagtttcccaaaagcattgcaAAGTTAACATTATCTTCACTGGGTgagagagtgttcagtgtgatgctcgctctaccattTAGTGATGATCTTTGTGTCTCAGGGAAACTCAACCCAGTTTagttaatataaacaaactagtagtgtaatttaaaccactgtgacacTGActaggcagttactaaggatgaatcaGTGAAGGCTGTAAATACATCACACAGCACCGCACACTCATATTAACGCTCATATTAACGCTCATATTAACGCTCGTGTTAACGTTTGTGGTCTTTGTTCGTCCTGTGAGCTTCACATCTGACTGCTCACTCGTGaccacatgaaaacaaaaacctccAGCTCGCGTGAACTTTTGTTGAgatcccagtcctgatacaCTCCTCCAGTCTCACTCAGATGCCCTGTGAAGCTTTCTGACATCTGAcaaactttctaaaaaaaaaagtgcacctcctatttggATCTTTGAAGTCTATACTTGcgtctgtttagaacacattaccTTCTGAATGATGTAACATCAAACACgttaaaaatctgatttgagCTGCTTGTCTGAACAAAGAcgatgtctctgtgtgtgtgctgtcctGCTCACGGCTCGTCCAGCTTCCTGCTCTGTGCTGTAAAAATGACTGCAGCTCTATTCGTCTCAGTCTCTATTTGTCTGCCTTGTTgtgtacttcctgttcctgtttcgcaccttcttcttcctctcagtAGCGTCAGGTCACTTCAGTGGAAACATGGAGCTTCTCGATAAAGGACACTAGACGCTTTGATGGACTTCAACTTGAAAAGAAGCCACACGTCAAGTTCACTATTCACAGATAATCTTCCAGTGGATGTGCAATTACAGAAAAGACTGGAACACAAGCACTTCTCACCagaaaatattttagtaaaCCTGACACTAATTTTGAGTAACTATCCTATTGTTTGAATGTATtcgtgttattattattattattattattattattattattattattattattattatttatggtgTTATGTTAATTTACCTTGCAGTCAAAGAAAACGTCACAGTTGCTAAACAAATACTATCGTAAAGTAAATCTAATTTAAGAGAGcatatatatctgtatgtgtatctatttaaataataaatacatatttaatctTGACAAATATTCCAGATCCTCACAAATACACTGAAGGTCATGTGTTCATTTCTGTATGAAACCGAGTCGTCGAATCTTCGTAGTTTCCCGTAATGTCCAGCTATAAAACAATGACCGCTGTCTCAGCATGTCGAGTTTAGCTACAATATCACACAAGCGTACAAGTATCTGTTCCGCCAAACGCAGTCCTGAAATTGTGTTacagtgaaacagtgaaacagtgaaacagtTCTCATCAAATCGTACatctgtctttaaaaaaaaaaaaaaagtgaaatatttcaagtggaaaaaaagtCGAACTCCCCGCTGGTGCAGGATGTTCAGGTCATTAAAATGTCCGGATGATTTCCTGATTAACGCTTCACCACTGCGATGCCTCCGAGCTGCTTTTACACAACCGTCTGTGGAAATGATGTCTAATGTCTGAAGATGtgaaatgcagaaaataaaaataaacagaaaactgatcaca

Function

NR:

description
PREDICTED: bone morphogenetic protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127479 False 1135 lncRNA 0.38 3 30919184 30989204
XM_034305388.1 True 4303 mRNA 0.45 3 30919185 30930200

Neighbor

gene id symbol gene type direction distance location
ppp1r37 ppp1r37 coding downstream 21094 30857929 ~ 30898090 (-)
LOC113524884 LOC108264165 coding downstream 62037 30850404 ~ 30857147 (-)
si:dkey-30c15.2 LOC108264169 coding downstream 114688 30792940 ~ 30804496 (-)
pdp2 pdp2,LOC108423909 coding downstream 159005 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 164094 30740467 ~ 30755090 (-)
cntn5 cntn5,LOC107691883 coding upstream 118486 31107690 ~ 31236932 (-)
LOC117597590 NA non-coding downstream 11163 30900565 ~ 30908021 (-)
G107806 NA non-coding downstream 34571 30835634 ~ 30884613 (-)
G107805 NA non-coding downstream 89531 30828151 ~ 30829653 (-)
G107800 NA non-coding downstream 93097 30811047 ~ 30826087 (-)
G107804 NA non-coding downstream 96827 30820709 ~ 30822357 (-)
LOC117597523 NA non-coding upstream 7069 30996273 ~ 30999390 (-)
G107967 NA non-coding upstream 284008 31273212 ~ 31273477 (-)
selenot1b LOC108264179,LOC108429894 other downstream 69487 30785593 ~ 30849697 (-)
G107803 NA other downstream 98762 30816579 ~ 30820422 (-)
bbs10 bbs10 other downstream 187125 30728044 ~ 30732059 (-)
G107525 NA other downstream 574308 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1205183 29620799 ~ 29714001 (-)

Expression


Co-expression Network