LOC113524884 (LOC108264165)


Basic Information

Item Value
gene id LOC113524884
gene name LOC108264165
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30850404 ~ 30857147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911250.2
TAAAGCATGTTTTTGAGGGACGGCCTGGAGTCAGAGCTGGTGCAGATcctgtaataaacacacacgcgGTCAGAAAGTTAGTCGTGCTAACAATAAGGAGTGTGTTCTCTCTGCGCTCCTCGCTGTTCCTCTCCATCATCAGCTGATCGGAGCCGTGAGCTGGAACACACTGTACAGACGATCAGCAGATACTGTGGCAGTGTGAGTGCAGTTCTCTTCATGATAATCACCACACTGAAGTCCACGTGGGATCCTCAGGGACACGACATGAGAAGTTCTGGCTGtgttttagtttctgttatccATGTTTCAGGATGTGATATTATATCTGCTGCCTCAGCCAAAATAAAGGACAAAAAATCTTTAACAATTAACAGGAGGTCAGAGAGTCAGAAAATGGCGCATCCTGACACTGTGTCCAGACTTTGAACCTGTTCTTCTCTCTGGTCTTTTAGCAGCAAAACATGACATCGTTATTATTAAAGACTCGGACTGAGGTTTCGAGACGTTTCTGAACCTGTTTGTTGATGCAGATGTACGTTTTCCTCCTGTTTTGATCTCTTCAGgtgtgtgatggacaggtcAGAGGTGTGGGCGGAGCCTCCGCACAGGTGCATGCTGGTCCTGACGTGTGCGCTCCTGGTGTGTGAGGTCGTCGTTGGACGTCTCTGTAACTCCCTCATTAACATGGTGGACAGCTTCCACACCCTCTACGTCCTCATTGGCATGACAATGTCCACACGAGGTGCTGAGGAGAACCCCAGCGTCTCAGCAGAACCGCAGGACGTGTCGTGTCCCGACTCCGGCGCTGTGGAGAACCGCACGTCTCCGCTCTCTGATGGAGTTCAGTACTCTAGGCTCCGCGTGCAGCCGGTCGGAGGTCTGATCTCAGCCCTGCTGctctcctcactgtgtgtgtcctTCAGCTTCGATATCCTCAGCCACACACTGCAGCCTCACCCCATACAGCGCCCTCTACTGGCCACGGCTGTAGGCGCCGTCAGTCTGCTGTTTAATCTTCTGCTGCTGGTGTGGAGAAGACCGAGACAAACAGACGCAGGAGTTAAAGAACTGAGAAACGGCGAGACAGAAACTCCTTTAACTCCAGCAGGTTCTCCTCACGATGGCGTCCTGATGTTCTGTAACCCCGGAGCGTCCAGCGTTCTCAGTCCAGACTCTCAGGATCACACCGTTCATCCTCAGCCCACCTCCATTTCCCACGATTCCACTCACACAGAAACAGTCGGAGAAGAGTCGAAGTGCTGCAGCAGAGGCTCAGGCCACGCTGCGGATCAGCAGTGTGAcgcgagtgtgtgtatgaggagcATCATCACGGTGTTCCGCAGCCTCCTGGGTTCTTCTCTGGTTCTGCTTAACGGATTCCTTCACCTTCTCTGTGTGAGGTTTCAGtggagctgtgatgtgagcGTGTACCTGGACCCGGGGTTCTCCATGCTCACCGTGCTGGTTCTGTTAGCGGCGGTGGTTCCTGAGCTCCAGCGTCACGTCTTACTCCTGCTCCAGGCGTCTCCACCAGGCCTGTGCACGGAGGAGCTGGCGGTGGAGATCGGGCGAGTCCCCGGCGTGTTGTCCGTGCACGAGCTCCACGTGTGGCAGCTCTCTGAGACCTGCGTCGTGGCCTCGGTGCACGTTCACTGGCCGTCGGGTCTGAGCGCGCTCCAGTGTTCGGAACTCCTGAGGAGCATCGCGGAGGTGCTGAGGAGGTTCGGGGTGAAGCGCTGGACCATACAGCCCGAGTTTCTGACCTCTCACCCCGAGGATGCTGCGTTACAGACACACTGCGCTCTGCGATGTGGGAAAGCGTGTGTGAGGAAGATGTGCTGCTCACCTCCAGAGGAACGTTTCAGCTCCACGTCTGTCCACGTGAACGACAGGATGCAGGACGTCATCATTCAGAACACACGCTTATAACCCTGATCATAAACACTCGATATTATATCAGCTACAGCGTTCTCGTACTGCTCGAGCTTCTAAACATGTGACGATGCTCTATAGTCTTACAATATTCACctaaaattataaacattttattactcTCTAACTGTCTCCCTCATCAAGagtgaaatttatttacataaatgttaaaaatgtaattattaaatgtaaatgataaatataggAACCAGTACAGCTCTATACTCAaccatttatatttgtattaaatgtttacatttacatttaacttttaaattgacttttttaaaatttgtatttgaTACTGAACTCATTTCTCACtgacattttgaacatttaagcataattttaataaagatagaaatttatttaaaacaacagcCTGACATTTCAGTggaatattttgttaaacataatgactgaaataattcatatttcttAGTAAATTATTTAGTT
>XM_026911251.2
TAAAGCATGTTTTTGAGGGACGGCCTGGAGTCAGAGCTGGTGCAGATcctgtaataaacacacacgcgGTCAGAAAGTTAGTCGTGCTAACAATAAGGAGTGTGTTCTCTCTGCGCTCCTCGCTGTTCCTCTCCATCATCAGCTGATCGGAGCCGTGAGCTGGAACACACTGTACAGACGATCAGCAGATACTGTGGCAGTCAGCAAAACATGACATCGTTATTATTAAAGACTCGGACTGAGGTTTCGAGACGTTTCTGAACCTGTTTGTTGATGCAGATGTACGTTTTCCTCCTGTTTTGATCTCTTCAGgtgtgtgatggacaggtcAGAGGTGTGGGCGGAGCCTCCGCACAGGTGCATGCTGGTCCTGACGTGTGCGCTCCTGGTGTGTGAGGTCGTCGTTGGACGTCTCTGTAACTCCCTCATTAACATGGTGGACAGCTTCCACACCCTCTACGTCCTCATTGGCATGACAATGTCCACACGAGGTGCTGAGGAGAACCCCAGCGTCTCAGCAGAACCGCAGGACGTGTCGTGTCCCGACTCCGGCGCTGTGGAGAACCGCACGTCTCCGCTCTCTGATGGAGTTCAGTACTCTAGGCTCCGCGTGCAGCCGGTCGGAGGTCTGATCTCAGCCCTGCTGctctcctcactgtgtgtgtcctTCAGCTTCGATATCCTCAGCCACACACTGCAGCCTCACCCCATACAGCGCCCTCTACTGGCCACGGCTGTAGGCGCCGTCAGTCTGCTGTTTAATCTTCTGCTGCTGGTGTGGAGAAGACCGAGACAAACAGACGCAGGAGTTAAAGAACTGAGAAACGGCGAGACAGAAACTCCTTTAACTCCAGCAGGTTCTCCTCACGATGGCGTCCTGATGTTCTGTAACCCCGGAGCGTCCAGCGTTCTCAGTCCAGACTCTCAGGATCACACCGTTCATCCTCAGCCCACCTCCATTTCCCACGATTCCACTCACACAGAAACAGTCGGAGAAGAGTCGAAGTGCTGCAGCAGAGGCTCAGGCCACGCTGCGGATCAGCAGTGTGAcgcgagtgtgtgtatgaggagcATCATCACGGTGTTCCGCAGCCTCCTGGGTTCTTCTCTGGTTCTGCTTAACGGATTCCTTCACCTTCTCTGTGTGAGGTTTCAGtggagctgtgatgtgagcGTGTACCTGGACCCGGGGTTCTCCATGCTCACCGTGCTGGTTCTGTTAGCGGCGGTGGTTCCTGAGCTCCAGCGTCACGTCTTACTCCTGCTCCAGGCGTCTCCACCAGGCCTGTGCACGGAGGAGCTGGCGGTGGAGATCGGGCGAGTCCCCGGCGTGTTGTCCGTGCACGAGCTCCACGTGTGGCAGCTCTCTGAGACCTGCGTCGTGGCCTCGGTGCACGTTCACTGGCCGTCGGGTCTGAGCGCGCTCCAGTGTTCGGAACTCCTGAGGAGCATCGCGGAGGTGCTGAGGAGGTTCGGGGTGAAGCGCTGGACCATACAGCCCGAGTTTCTGACCTCTCACCCCGAGGATGCTGCGTTACAGACACACTGCGCTCTGCGATGTGGGAAAGCGTGTGTGAGGAAGATGTGCTGCTCACCTCCAGAGGAACGTTTCAGCTCCACGTCTGTCCACGTGAACGACAGGATGCAGGACGTCATCATTCAGAACACACGCTTATAACCCTGATCATAAACACTCGATATTATATCAGCTACAGCGTTCTCGTACTGCTCGAGCTTCTAAACATGTGACGATGCTCTATAGTCTTACAATATTCACctaaaattataaacattttattactcTCTAACTGTCTCCCTCATCAAGagtgaaatttatttacataaatgttaaaaatgtaattattaaatgtaaatgataaatataggAACCAGTACAGCTCTATACTCAaccatttatatttgtattaaatgtttacatttacatttaacttttaaattgacttttttaaaatttgtatttgaTACTGAACTCATTTCTCACtgacattttgaacatttaagcataattttaataaagatagaaatttatttaaaacaacagcCTGACATTTCAGTggaatattttgttaaacataatgactgaaataattcatatttcttAGTAAATTATTTAGTT
>XM_034305071.1
agaaaggggagagagagagagagagagagagagagagagagagagagagggggagagagagctgTCACTCTGAGAAAACTACAACCTGTTGGAAAGAAGAGAAACTCCAGTAAAAGgtgtgtgatggacaggtcAGAGGTGTGGGCGGAGCCTCCGCACAGGTGCATGCTGGTCCTGACGTGTGCGCTCCTGGTGTGTGAGGTCGTCGTTGGACGTCTCTGTAACTCCCTCATTAACATGGTGGACAGCTTCCACACCCTCTACGTCCTCATTGGCATGACAATGTCCACACGAGGTGCTGAGGAGAACCCCAGCGTCTCAGCAGAACCGCAGGACGTGTCGTGTCCCGACTCCGGCGCTGTGGAGAACCGCACGTCTCCGCTCTCTGATGGAGTTCAGTACTCTAGGCTCCGCGTGCAGCCGGTCGGAGGTCTGATCTCAGCCCTGCTGctctcctcactgtgtgtgtcctTCAGCTTCGATATCCTCAGCCACACACTGCAGCCTCACCCCATACAGCGCCCTCTACTGGCCACGGCTGTAGGCGCCGTCAGTCTGCTGTTTAATCTTCTGCTGCTGGTGTGGAGAAGACCGAGACAAACAGACGCAGGAGTTAAAGAACTGAGAAACGGCGAGACAGAAACTCCTTTAACTCCAGCAGGTTCTCCTCACGATGGCGTCCTGATGTTCTGTAACCCCGGAGCGTCCAGCGTTCTCAGTCCAGACTCTCAGGATCACACCGTTCATCCTCAGCCCACCTCCATTTCCCACGATTCCACTCACACAGAAACAGTCGGAGAAGAGTCGAAGTGCTGCAGCAGAGGCTCAGGCCACGCTGCGGATCAGCAGTGTGAcgcgagtgtgtgtatgaggagcATCATCACGGTGTTCCGCAGCCTCCTGGGTTCTTCTCTGGTTCTGCTTAACGGATTCCTTCACCTTCTCTGTGTGAGGTTTCAGtggagctgtgatgtgagcGTGTACCTGGACCCGGGGTTCTCCATGCTCACCGTGCTGGTTCTGTTAGCGGCGGTGGTTCCTGAGCTCCAGCGTCACGTCTTACTCCTGCTCCAGGCGTCTCCACCAGGCCTGTGCACGGAGGAGCTGGCGGTGGAGATCGGGCGAGTCCCCGGCGTGTTGTCCGTGCACGAGCTCCACGTGTGGCAGCTCTCTGAGACCTGCGTCGTGGCCTCGGTGCACGTTCACTGGCCGTCGGGTCTGAGCGCGCTCCAGTGTTCGGAACTCCTGAGGAGCATCGCGGAGGTGCTGAGGAGGTTCGGGGTGAAGCGCTGGACCATACAGCCCGAGTTTCTGACCTCTCACCCCGAGGATGCTGCGTTACAGACACACTGCGCTCTGCGATGTGGGAAAGCGTGTGTGAGGAAGATGTGCTGCTCACCTCCAGAGGAACGTTTCAGCTCCACGTCTGTCCACGTGAACGACAGGATGCAGGACGTCATCATTCAGAACACACGCTTATAACCCTGATCATAAACACTCGATATTATATCAGCTACAGCGTTCTCGTACTGCTCGAGCTTCTAAACATGTGACGATGCTCTATAGTCTTACAATATTCACctaaaattataaacattttattactcTCTAACTGTCTCCCTCATCAAGagtgaaatttatttacataaatgttaaaaatgtaattattaaatgtaaatgataaatataggAACCAGTACAGCTCTATACTCAaccatttatatttgtattaaatgtttacatttacatttaacttttaaattgacttttttaaaatttgtatttgaTACTGAACTCATTTCTCACtgacattttgaacatttaagcataattttaataaagatagaaatttatttaaaacaacagcCTGACATTTCAGTggaatattttgttaaacataatgactgaaataattcatatttcttAGTAAATTATTTAGTT

Function

NR:

description
PREDICTED: zinc transporter 10-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911250.2 True 2391 mRNA 0.49 4 30850404 30857147
XM_026911251.2 False 2137 mRNA 0.50 5 30850404 30857147
XM_034305071.1 False 1941 mRNA 0.50 4 30850404 30854568

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.2 LOC108264169 coding downstream 45908 30792940 ~ 30804496 (-)
pdp2 pdp2,LOC108423909 coding downstream 90225 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 95314 30740467 ~ 30755090 (-)
caps2 caps2 coding downstream 139681 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 225071 30614083 ~ 30625333 (-)
ppp1r37 ppp1r37 coding upstream 782 30857929 ~ 30898090 (-)
gemin7 gemin7 coding upstream 104216 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 130108 30987255 ~ 31068479 (-)
cntn5 cntn5,LOC107691883 coding upstream 250543 31107690 ~ 31236932 (-)
G107805 NA non-coding downstream 20751 30828151 ~ 30829653 (-)
G107800 NA non-coding downstream 24317 30811047 ~ 30826087 (-)
G107804 NA non-coding downstream 28047 30820709 ~ 30822357 (-)
LOC113526678 NA non-coding downstream 134951 30714118 ~ 30715453 (-)
G107550 NA non-coding downstream 380501 30443523 ~ 30469903 (-)
LOC117597590 NA non-coding upstream 43418 30900565 ~ 30908021 (-)
LOC117597523 NA non-coding upstream 139126 30996273 ~ 30999390 (-)
G107967 NA non-coding upstream 416065 31273212 ~ 31273477 (-)
selenot1b LOC108264179,LOC108429894 other downstream 707 30785593 ~ 30849697 (-)
G107803 NA other downstream 29982 30816579 ~ 30820422 (-)
bbs10 bbs10 other downstream 118345 30728044 ~ 30732059 (-)
G107525 NA other downstream 505528 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1136403 29620799 ~ 29714001 (-)
LOC113524890 LOC108264167 other upstream 62037 30919184 ~ 30989204 (-)

Expression


Co-expression Network