luzp2 (luzp2,LOC107746562,LOC107739427,LOC107656854)


Basic Information

Item Value
gene id luzp2
gene name luzp2,LOC107746562,LOC107739427,LOC107656854
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29971467 ~ 30064366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913330.2
ACGAGAGAGCcgaggaagagagggaggagggaaaGAGACGAGGAGAGTGAGGAGAGCagaacagaaagaaacacacagagcacaCGGAGAGCAAAAGAGCGAGAGATGAAATTCCTCGGAGCCGTCTGCATCCTTCTCTTCCTGCCCGATTTCAGCCTCAACAGCAGcTATGAAGTGCTGGAGAAGAAGCTGAAAGAGGCGTTCACAGAAAGAACCGGGATTTTACGGCAACTCTCGAAAACGTCGAAGGAGCTGGACAGCATAAAGGGCAACCTGCAGTCAATGAAGAATGAGGACTCAATGCCCAAAAAGGATGTGCAGAGGATTCTGGAGCTGAGTCACAAACAAAGAGAAGAGATGAGATCACTCCAGGCAGCCCTTCAGAAGCAACTGGACGAGGCGGCAGAGCGAGCCGAGAAACATCAAGCCACGATCAAGTTCCTGAAGatggaaatggagaaaaagaccAAAATCATCAAAGACCTACAGCAGGAGaACAAAAGCTTGAAGAATAAACTCCTTTCTGGGAATAAGCTGTGTGACATACATGCAGAAGAGTCTAAAAGAATCCAGGCCCAACTGAAGGAGCTGAGATACGGCAAAAAGGATTTAATTTTCAAGGGTCAGCAGCTCATGGACCTGGAGAACAAGCTACGAGTGGCCAAAGAGGAACTGGAGAAAGCAGCGCTGGACAAGGAGTCCCAGCTGAGGGCTTTGAAGGACACGGTCCATATCTGCTTCTCATCTGTCCTACAAACCCAGACGGTGGATTTACACAGACTGCCGGCCACGCCCACTCACTTGATGCGATACTCTCCGTTTGTCAATAACTCAAGAGTCACCTTCAGGGAGCCGCACATGAAGGACATCCCAAAGGTTCCCAGAGTCACAACAAGTAAATCTCCTGTGAACATGGAGCTAATGAGGAGAGACGGTACAGGAGTCAAGGCCTGCCAGATGGTAAAGGTGGGTGCTGAATGTTCCCAGAATCAAACTGAGAGAACATCTGTGGAGAAATCAGACCAACCTGCGCACCACCAGCCGGGGACTCTGGAACACACCGACGCACAGACGTCCGTGAACAGCGGGAAGAtggagggaggaaaaaagacaCAGCTGGACAAACACAACTGAGACACGACTAAACAACACAGCTGGATAAACACGACTAAAAGACTTGGCAGATTTTTCCGTGTGGTATCAGTTTAATCAGTTTAACTCCCCTGACCTGTCACTCACAGAGAatagaaagcacacacacacacacacacacacacacacacacacacactgacacacacactgtaagtaTCACTGCTATTGTAGAGAAGGAACCCCAAATGTCCGAGTTTGACCTGAGATCCAGCAGCTTAGTACAACGGCATGCACTATAGACCTTTAGGTTTCTCGTTTATAACCGTACtggtcttttctttctttcttttttataataacACGTCTGTTATTTTATCCTTTTGAGTTGTTTGGGATTTCTCCAGAGATTGTGGACATCTTTTGATTTGTGGTATTTGTAGTTGAGAACTTTGTGGACTTGCACCACAGGCCGGAGACACATTCACTCGTTGAATCACATGCACGAGCTTCTAATTCACTTCACTCTCGGCCACAGTTTGCCGAAAGTTGATAAAAGAAGCAAGGATATGGATCTGACATCACACTGGTTCTGTTTTGAATTACCCGGTACTAAAATTCCTCTTAAATTACGCAAGAACTGTTGAAGAGCGAAGatataaatgtaaagatttGGTTCTTTTTTGTGGTGGTGgtacttttaatttaaactctTCCCTTTTCTGTATTCTGAAGTCTTAGTATAAATCGAGTAAATCGAGTTGGCTGGCCAACTTTGATCACTGAACAACCTGAAAGCTTTTGGTGCAAgaatttaaagagaaaaaggaaaaaaaaaacagactcacAGTGAGTCGTCTCCCTGAGAATGATGTGCCATGCACTGAGGACTTAATCTACTGCTACATGTCTCGGTTTCTCTACCTTCCTGTGTCCTTTCAATAAAACCGTGATTTTCACTAAA

Function

symbol description
luzp2 Predicted to be located in extracellular region. Orthologous to human LUZP2 (leucine zipper protein 2).

NR:

description
PREDICTED: leucine zipper protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913330.2 True 2056 mRNA 0.46 12 29971467 30064366

Neighbor

gene id symbol gene type direction distance location
lrch3 lrch3,LOC103027580 coding downstream 204720 29727090 ~ 29766747 (-)
kiaa1549lb LOC108264854,LOC108433503 coding downstream 313658 29599585 ~ 29657809 (-)
spon1a spon1,spon1a,LOC107741890 coding downstream 492035 29398604 ~ 29479432 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding downstream 601916 29345335 ~ 29369551 (-)
ppfibp2a LOC108264606,LOC108434021 coding downstream 640514 29294886 ~ 29330953 (-)
tspan4a tspan4,LOC106561924 coding upstream 72645 30137011 ~ 30256084 (-)
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding upstream 291155 30355521 ~ 30359530 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding upstream 362814 30427180 ~ 30433055 (-)
adm2b LOC108264181 coding upstream 372663 30437029 ~ 30444319 (-)
LOC113526499 LOC108264175 coding upstream 388341 30452707 ~ 30464074 (-)
G107217 NA non-coding downstream 48274 29922742 ~ 29923193 (-)
G107210 NA non-coding downstream 126610 29765376 ~ 29844857 (-)
G107191 NA non-coding downstream 247090 29724114 ~ 29724377 (-)
G107193 NA non-coding downstream 263567 29680263 ~ 29707900 (-)
LOC113526826 NA non-coding downstream 691284 29273077 ~ 29280183 (-)
G107510 NA non-coding upstream 245481 30309847 ~ 30311846 (-)
G107532 NA non-coding upstream 299261 30363627 ~ 30391458 (-)
G107533 NA non-coding upstream 303972 30368338 ~ 30369188 (-)
G107536 NA non-coding upstream 304521 30368887 ~ 30406964 (-)
G107574 NA non-coding upstream 356886 30421252 ~ 30423338 (-)
hipk3b hipk3,LOC108264637 other downstream 257466 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 2811368 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3363128 26569085 ~ 26608339 (-)
G105376 NA other downstream 3730462 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 4422539 25385325 ~ 25548928 (-)
G107525 NA other upstream 279165 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 663678 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 721227 30785593 ~ 30849697 (-)
G107803 NA other upstream 752213 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 854818 30919184 ~ 30989204 (-)

Expression


Co-expression Network