dcun1d5 (dcun1d5,LOC107712802)


Basic Information

Item Value
gene id dcun1d5
gene name dcun1d5,LOC107712802
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23547392 ~ 23557534 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913335.2
cTCACCGCGACCGGAAGTCATTCTCATTATGGGGGCTAGTTTCACAGTTCTCTTCACTCAGCCTGCGATTGTCCTGTTGTGAAGAGGCAGCTCGGCTCCTGGCGTCTTTATTTACACCAGAGTCTCTGGACGCGGAGTTTTCAGaaacacgACACTCAGGGATTTGAGCTGAACAGTGAAGAGGAGAGTGTCCTAAACCTGAGGACAACGGTACGGACTGGAGGACATTAAGAACGTGTCTCAAACACTGGATAGACTTaATCTTGTCGACTTGAATGGACAAAGTGACCGGGTGTACACAGattctGCAAGGCTAAATCAACCTTTTGGAAACCCCGTTATGcctgtaaaaaagaaaagaaagtccTCTGGTTCTGAAGACCCCAGCATCCGGAAGTGCAAAATTACCAGTTACTGTAGGACACAGACTCCTGGGAGATTGATAAACCCCGAAGATCAGTTCTCCAGCAAGAAGTGCCTTGCGTGGTTTTACGAGTATGCAGGGCCGGATGATGTGGTGGGACCCGAGGGCATGGAGAAGTTCTGTGAGGATATAGGCGTTGAACCAGAGAACATTATCATGTTAGTCTTAGCCTGGAAACTAGAAGCACCAAATATGGGATTTTTCACAAAAGAAGAGTGGCTGAAGGGAATGACGTCACTGCAGTGTGATTGCACAGAACGGTTACAAGGCAAACTCGACTATTTGCGTTCTCAGCTGAACGACGCAGCCGTGTTCAGGAACATATACAGATACGCCTTTGACTTTGCCAggGATAAAGACCAGCGTAGTCTAGACATGGACACTGCAAAGTCAATGTTGGCGCTGCTTCTTGGAAGAACGTGGCCCCTGTTTCCTGTGTTTCACCAGTTTTTGGAGCAATCTAAGTATAAGGTTATGAACAAGGATCAGTGGTACAACGTCTTAGAGTTCAGCCGCACTGTTAACTCAGACCTCAGTAACTACGACGAGGACGGAGCTTGGCCGGTGATGCTGGACGAGTTTGTGGAATGGTATAAAGCCAGACTGACATTATAGCACCACATGGTCATGCGTGTAAAATTTAAGGGCAAAGAAATTTAAGGGCAAAAGCACATCAATGGACGCCATCCCTCCACCCTAAATAGTCCAGAGAATCAATTGCACACCTTCACAGGAAAGTCGTCATGCTTCTTGTGGACCCATCAGAGCCCAGAGACTTACAGTGTTAATTTAACTTGAAAaggaaaatgtctgaaatggaGGGAACTGCTTTAAATGTGTTGCATCTTTCACAGCAGTTTCATTGCCAGTGTTGTTCGGTCTGGTGGAGGGAAGTCAtctgtttatgtaatattttt
>XM_034304937.1
ACGGTACGGACTGGAGGACATTAAGAACGTGTCTCAAACACTGGATAGACTTaATCTTGTCGACTTGAATGGACAAAGTGACCGGGTGTACACAGattctGCAAGGCTAAATCAACCTTTTGGAAACCCCGTTATGcctgtaaaaaagaaaagaaagtccTCTGGTTCTGAAGACCCCAGCATCCGGAAGTGCAAAATTACCAGTTACTGTAGGACACAGACTCCTGGGAGATTGATAAACCCCGAAGATCAGTTCTCCAGCAAGAAGTGCCTTGCGTGGTTTTACGAGTATGCAGGGCCGGATGATGTGGTGGGACCCGAGGGCATGGAGAAGTTCTGTGAGGATATAGGCGTTGAACCAGAGAACATTATCATGTTAGTCTTAGCCTGGAAACTAGAAGCACCAAATATGGGATTTTTCACAAAAGAAGAGTGGCTGAAGGGAATGACGTCACTGCAGTGTGATTGCACAGAACGGTTACAAGGCAAACTCGACTATTTGCGTTCTCAGCTGAACGACGCAGCCGTGTTCAGGAACATATACAGATACGCCTTTGACTTTGCCAggGATAAAGACCAGCGTAGTCTAGACATGGACACTGCAAAGTCAATGTTGGCGCTGCTTCTTGGAAGAACGTGGCCCCTGTTTCCTGTGTTTCACCAGTTTTTGGAGCAATCTAAGTATAAGGTTATGAACAAGGATCAGTGGTACAACGTCTTAGAGTTCAGCCGCACTGTTAACTCAGACCTCAGTAACTACGACGAGGACGGAGCTTGGCCGGTGATGCTGGACGAGTTTGTGGAATGGTATAAAGCCAGACTGACATTATAGCACCACATGGTCATGCGTGTAAAATTTAAGGGCAAAGAAATTTAAGGGCAAAAGCACATCAATGGACGCCATCCCTCCACCCTAAATAGTCCAGAGAATCAATTGCACACCTTCACAGGAAAGTCGTCATGCTTCTTGTGGACCCATCAGAGCCCAGAGACTTACAGTGTTAATTTAACTTGAAAaggaaaatgtctgaaatggaGGGAACTGCTTTAAATGTGTTGCATCTTTCACAGCAGTTTCATTGCCAGTGTTGTTCGGTCTGGTGGAGGGAAGTCAtctgtttatgtaatatttttgtttatagtgttttcaaaggaaaataaaggaaCTGTATGAAA

Function

symbol description
dcun1d5 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D5 (defective in cullin neddylation 1 domain containing 5).

NR:

description
PREDICTED: DCN1-like protein 5 isoform X1

GO: NA

KEGG:

id description
K17824 DCUN1D4_5; DCN1-like protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913335.2 True 1341 mRNA 0.46 12 23547434 23557534
XM_034304937.1 False 1176 mRNA 0.45 10 23547392 23554751

Neighbor

gene id symbol gene type direction distance location
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding downstream 11712 23513393 ~ 23535680 (-)
myo7aa myo7a,myo7aa coding downstream 43095 23455693 ~ 23504297 (-)
aqp11 aqp11 coding downstream 207011 23334177 ~ 23340381 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding downstream 248382 23297355 ~ 23299010 (-)
LOC113526825 LOC108263933 coding downstream 385083 23158732 ~ 23162309 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding upstream 1589 23559123 ~ 23571022 (-)
mtif2 mtif2 coding upstream 20505 23578039 ~ 23582080 (-)
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding upstream 57837 23615371 ~ 23632367 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding upstream 76543 23634077 ~ 23678458 (-)
abcc5 abcc5,LOC107670605,LOC107671530 coding upstream 144250 23701784 ~ 23731415 (-)
G103817 NA non-coding downstream 34064 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 217291 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 223980 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 272110 23270144 ~ 23275282 (-)
G103600 NA non-coding downstream 284309 23262807 ~ 23263083 (-)
G103820 NA non-coding upstream 15055 23572589 ~ 23575679 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 857366 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 976203 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1556443 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1634523 25192057 ~ 25214790 (-)
si LOC108264758,LOC108431149 other downstream 1240623 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2534292 20995341 ~ 21013100 (-)
G102566 NA other downstream 2580482 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3130818 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3567133 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 33411 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 91150 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 175336 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 922768 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1065982 24623516 ~ 24711368 (-)

Expression


Co-expression Network