syt9a (syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892)


Basic Information

Item Value
gene id syt9a
gene name syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29345335 ~ 29369551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913423.2
CAGCGCAGCAAGATCGAAGGAGTCTCGCGCGCACGCGTTCACCCCACGGATTCAACCGGTGGCGCGTGCTCGGATGCATTAACATCtcggtgaaaaaaaaaagaaaggaaagaaagataaagaaagaaaagaaagagttaGCGGTTGGGTATAATATCGAAGAGAGGATAGTGAGAACGCGACTGCACGTTTGGGATTTGATGATGCAATTCATGAACTgaagctttttttccctttcgCGCATCTCAGGAAAGAGGGTGggtacagcagagagagagagagagagagagagagagagagagagagagaggtgcggATCGGTGCCGTGGATCGCGCCTCTTCACTCACGAGGATGCTGGTGGGCAATGCCCGTGGACAGGGAGGCCGAGATTTGCCAGAAAGCGCTGGAGCTCCTCTCGGATCTCTGCTCTAAAGGGGAGGTGCAGAACGAGAACTGCCTGGATTTCATTTACTATTTCCGGGACCTGGCCAGACCGAGGTACTCCGAATCAGATGTCTCGGTGAGCCTGCTGTCATTGGTGGTGACCGCCTGTGGACTGGCCTTGTTCGGCGTCTCACTCTTTGTCTCCTGGAAGCTATGCTGGATCCCATGGCGCGAGCGAGGACTTTCTCCTGGAACCAAAGAGGGCCAAACAGAGcaccctcttcctcctcctccaccacttCAACCGCAGCCCATTTACACAGAAGTGGACGCCACTCTCGACCGCCGGAACCAACCACgaggctcagtggttaaggagACGACTGTGCCTCCAACGCCAGTCTCGCCGCCAGCACCCGGGTCACCTCCACCCGTCCCGGTGCCCGAGACAGCTCTGAAAATCAGCCACACTTCACCTGATATTGCCATGGAGGCAGAGTCCAAGGCTGGAGAGAACGGCATCTATGGCAGCGGTCGTATGCAGAGGCAGATCACAGATCCTTCCTCGACATGTGTTCGGCAAAGCTCCATTCGGCGCCACATGAACCAGTCCAACCCTGACTTCATGGTAGCTCAGTTCCAGAGGCAAGACTCGCTGACGGGGATGAGTCTCGGCCGACTCAAACCGGAGCTGTACAAGCAGCGCTCGTTAGACAGCGAAGAGAACCGCAGTGGTCGAGGGGGAATCTGTGGCCGCCTCCATTTCATCCTGAAATACGACTGTGATCTGGAGCAGCTCATAGTCAAGATCCACCGTGCCCAAGATCTTCCTGCCAAGGACTTTTCTGGGACCTCAGATCCCTACGTTAAGATCTACCTTCTTCCTGACCGCAAGACCAAGCACCAAACTAAGGTGCATCGAAAGACTCTGAACCCCGTTTTCGATGAGGTCTTCCTCTTCCCTGTGGCATATGCCGAACTTCCCACGCGAAAGCTCCACTTCACAGTTTACGATTTTGACCGGTTTTCACGGCATGACATCATCGGACAGGTGGTAGTGGACAACTTCTTGGATCTGGTGGACTTTCCACGGGAGACCAAGTTGTGCAGGGACATTCAGTACGTCTCCTCGGACAACGTGGATCTGGGTGATCTGATGTTTTCGCTCTGTTACTTGCCCACTGCTGGCCGACTGACCATCACAGTGATAAAGGCACGCAACCTGAAAGCCATGGACATCACCGGAGCGTCAGACCCCTACGTGAAAGTCTCACTGATGTGCGAAGGGCGGAGATTAAAGAAGAGGAAGACGTCCACTAAGCGGAACACCCTGAACCCTGTTTATAATGAGGCTATAGTATTCGACGTCCCACCAGAAAACATCGATCAGATTAGCCTTTTGATAGCTGTGATGGATTATGATCGTGTAGGTCACAACGAGGTCATAGGTGTGTGTCGTGTGGGTAACGATGCTGAGAGTCTGGGCAGGGACCACTGGAACGAGATGTTGACGTACCCTCGTAAACCCATCGCTCGCTGGCACCCTCTAATCGAGTACCAGGGCTCCAGCGGAGGAAGTCAGACGGGCTCGTGTAACTCTCTTAAGACTCCTCCATCCCCATAGAGCGGTTTCTGCTTCTGTCCTGGAACACGAGTGGGCGATAGGCTTCGTCCGGAGAAGACCCGAGAAGCTGGGCGATAGAGCTGCTAAGCCCCAGATAACGTGTTTCTTCTGGGAAAGGGACTCAGAAACACAGTTTGCCTCTGGAAGCCCTTCTTTGCATGGGAACACTTGATTGTTTCAGCTGCATGTTGAGTGGTCACATAATGTATGGTCGTTTTCTATGAAATATGGTGATATGAAAATATACAAGGGgtattttgatgtatttttcttttcctgatgTTGTAGTAGCCCGAATGTCATAGGCCGCCAATCAGGGAGGACGAAAAGCACATGTCTGATGTTGTGTATTTTGAAACCAGCGTCCAGAAGCATGGTCAAATACACATCATTCCCTTTTCCGAGGGATATCCATTCATGGGCTTGCTTTTGCACTTGAATTAGTGCAAAaagaaatgataataataataataataataataataataataataataataataataataataatggatttatGAGTCAACAAGAACAAATGTATGGATGTCTGTAAACTTgataaaatgtctgtttttgtttgtttgtttgtttttttaagaatagtcccatttttttaatggatattGTAACCTTTGTTATTGCATCATACATAGATCTTAAggtcacaacatttatttttattttttactcaaaAGTGCATGAGTGTGTTCAGGATAGGGTTCGGTCCAAAGTGTTTTCATTATGAAACAATGTGAATTCTGTCAACTGTTGCTTCCATTTGctgatgatttatttactttgtgggtaaaaaaaaaatagaaattcaTGCTATTAAAAACTtgtttcttaaaag

Function

symbol description
syt9a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dense core granule; exocytic vesicle; and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human SYT9 (synaptotagmin 9).

NR:

description
PREDICTED: synaptotagmin-9-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913423.2 True 2865 mRNA 0.48 7 29345335 29369551

Neighbor

gene id symbol gene type direction distance location
ppfibp2a LOC108264606,LOC108434021 coding downstream 14382 29294886 ~ 29330953 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding downstream 139892 29192381 ~ 29205443 (-)
LOC113526432 cdyl2,LOC106562298 coding downstream 492699 28808107 ~ 28852636 (-)
cenpn cenpn coding downstream 545972 28791791 ~ 28799363 (-)
atmin atmin coding downstream 554525 28782024 ~ 28790810 (-)
spon1a spon1,spon1a,LOC107741890 coding upstream 29053 29398604 ~ 29479432 (-)
kiaa1549lb LOC108264854,LOC108433503 coding upstream 230034 29599585 ~ 29657809 (-)
lrch3 lrch3,LOC103027580 coding upstream 357539 29727090 ~ 29766747 (-)
luzp2 luzp2,LOC107746562,LOC107739427,LOC107656854 coding upstream 601916 29971467 ~ 30064366 (-)
tspan4a tspan4,LOC106561924 coding upstream 767460 30137011 ~ 30256084 (-)
LOC113526826 NA non-coding downstream 65152 29273077 ~ 29280183 (-)
G106951 NA non-coding downstream 142491 29202007 ~ 29202844 (-)
G106772 NA non-coding downstream 539905 28805033 ~ 28805430 (-)
G106713 NA non-coding downstream 566317 28764739 ~ 28779018 (-)
G106705 NA non-coding downstream 583598 28761518 ~ 28761737 (-)
G107193 NA non-coding upstream 310712 29680263 ~ 29707900 (-)
G107191 NA non-coding upstream 354563 29724114 ~ 29724377 (-)
G107210 NA non-coding upstream 395825 29765376 ~ 29844857 (-)
G107217 NA non-coding upstream 553191 29922742 ~ 29923193 (-)
G107510 NA non-coding upstream 940296 30309847 ~ 30311846 (-)
si:dkey-151j17.4 NA other downstream 2185236 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 2736996 26569085 ~ 26608339 (-)
G105376 NA other downstream 3104330 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 3796407 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 4265823 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 251248 29620799 ~ 29714001 (-)
G107525 NA other upstream 973980 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1358493 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 1416042 30785593 ~ 30849697 (-)
G107803 NA other upstream 1447028 30816579 ~ 30820422 (-)

Expression


Co-expression Network