depdc7a (depdc7,LOC107576633,LOC107758055)


Basic Information

Item Value
gene id depdc7a
gene name depdc7,LOC107576633,LOC107758055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23765537 ~ 23786329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913498.2
TCCAGGCGAGTGTGTGTCATGCACCGACCTCCAGATGGCCGGGAAGCCGTTCCGTGCCACCTTTATCTGGAGCAGCATCATTAACAACCTGCAGACGCAGGTGGAGGTCAAGAGACGACGCCACAACCTGAAATCCTACCACGACTGCTTCCTGGGCTCCGAGGCTGTGGATGTCGTGTTGGCTCATATCATCCAGAACAAGTTCTGCGGCGATGATGAGGTGCCGCGGTTCAAAGCAGTGCGTCTCTGTCAGGCGCTCATGGACTCACGGGTGTTCGAAGCAGTGGACACCAAGGTGTTCGGGAAAGAGAAGAGGCAAGCCAAGTTTGAGGACAGCAGCTGTAGTTTGTACAGGTTCCTGAATACAAGTGCTAGCAAGGATACAATCGAACACACGTATGAATCAGCCTCCATCAACAGTACTGCACCACCAAAAagGGAAGAGGAACAGGAGTATTCAAACACCTCGCCAGTCAAAACAGATAAATCTCTGGAGGACGTTTTAGGGAACCTGAACGCAAACACAACCATCACACCCCAGCTGATGAATCTGGGTCTGTCACAGGAGTTGGTGGATGAGGTTTGGCAGCAGCAGGCAACACTGAGATTACTGCAGCTGATCGAGTTGCCTTTACTGGAGAGTCTTCTAGAAGGAAAGGAGAGTCCCCGTCCCCCTCTGCATGGTATGGACAGTGACCCAGATCTTCTCTACACCAGCAACTATGTGGACCGTGAAATCCTCAAAGCCTTCAGTGAAGCTCATGCTGATGCCTGGCTCTCAGCAGCTGTGGACTGTCTGGAGTTTCTTCCTGATCAGTTGGTAGTGGAGGTGAGCCGAGGGCTTGCTAAGTGTCCAGAGGAGACAGCTCAATATAAACATCTTCTCTATAACATTCTCATCCAACACTATGGCCAGACGGACTATCCTCCACTGTTTAGCAACCACGTCTTCGACATACACAGCGGGATATCAGAGCTATTAGTTAATGGGAAGCAGGAGCAGGCTCTGGAGGCCCTGCAGCTCTGTCTAAAACTCCAGGACTCCCGTAGCAGAGAGGAGCTCCGCAGACTCCTCCGCTTCATGGCTCTCGCTGCACAGCCAAATGACCTCAAACTGCACAAAGAGATAGAGAACAGGATGGCAGTGAAGAGAGCGTTCTCCAGTGCTATCGTGTACAGCGCCAGACTCGCCAAGGGAAAAGTGGATCTTTTGGTGCTTTTCATGATAGACAACCACTTGGATCTTTTCAAGATTCCTGTATCATTACACAAGCTTGTTAGTGATAAACTAGCCACCATCATCAAGGGCAAAGATCCTGATGTCCTTACAGGTCCATCTTACTGTAGACGTCTTTCGAGGACCACTTACATGCAGACAGTACAGAAAACCACTAAAGAGGAGCTGTTCACTTTACTCCGAACCATTCATGAGAACCCCAAACtttctgtaaaagaaaagcGGCGACTGCTCGGACAGTTCTACAGAGGCCATCCTGAGATATTCGTGCAGTATTTTGGCAACCAGATATCCAGTGCTTATCTGTAACACACTGCTTTACTGAAATGCGTTTGCACAAGATGTACAAAGTGACATGTAAATTCTGTAAAATGtcttgtaaatatgtaaaaaaaaaattttaatgttatttactttttatgCACGGATGCATGAGTTAACAAAGGTCAATGTGTAACATCATGCACCTTTTAATGcctgtattaaaaatatgaattatatttatCAGGCTTTTTTCAGACCTATAATGTAAATGGTTTTGTTCTGATGTGACTGTCCTCAAATGATGTGACCCTCATGGGCAtttgtacatgtttttcttGGTTCCTAAACACTGTCAATGAAATAGAgccatttataaataaatagtcttttttttttttaaatttacgcCAACCTATGA
>XM_026913499.2
GTTTTCAGTCACGTGGGCAGGTTGTCCAGTAGAAGGACCTTTTTCAGcacctgtttttctttttctgtaaaaaaaaaacctacgtTTTAGGAAGGATTAATCCTCCACTCACACGAATGCTGGTTTAATCTGGACATAAAGATGGCCGGGAAGCCGTTCCGTGCCACCTTTATCTGGAGCAGCATCATTAACAACCTGCAGACGCAGGTGGAGGTCAAGAGACGACGCCACAACCTGAAATCCTACCACGACTGCTTCCTGGGCTCCGAGGCTGTGGATGTCGTGTTGGCTCATATCATCCAGAACAAGTTCTGCGGCGATGATGAGGTGCCGCGGTTCAAAGCAGTGCGTCTCTGTCAGGCGCTCATGGACTCACGGGTGTTCGAAGCAGTGGACACCAAGGTGTTCGGGAAAGAGAAGAGGCAAGCCAAGTTTGAGGACAGCAGCTGTAGTTTGTACAGGTTCCTGAATACAAGTGCTAGCAAGGATACAATCGAACACACGTATGAATCAGCCTCCATCAACAGTACTGCACCACCAAAAagGGAAGAGGAACAGGAGTATTCAAACACCTCGCCAGTCAAAACAGATAAATCTCTGGAGGACGTTTTAGGGAACCTGAACGCAAACACAACCATCACACCCCAGCTGATGAATCTGGGTCTGTCACAGGAGTTGGTGGATGAGGTTTGGCAGCAGCAGGCAACACTGAGATTACTGCAGCTGATCGAGTTGCCTTTACTGGAGAGTCTTCTAGAAGGAAAGGAGAGTCCCCGTCCCCCTCTGCATGGTATGGACAGTGACCCAGATCTTCTCTACACCAGCAACTATGTGGACCGTGAAATCCTCAAAGCCTTCAGTGAAGCTCATGCTGATGCCTGGCTCTCAGCAGCTGTGGACTGTCTGGAGTTTCTTCCTGATCAGTTGGTAGTGGAGGTGAGCCGAGGGCTTGCTAAGTGTCCAGAGGAGACAGCTCAATATAAACATCTTCTCTATAACATTCTCATCCAACACTATGGCCAGACGGACTATCCTCCACTGTTTAGCAACCACGTCTTCGACATACACAGCGGGATATCAGAGCTATTAGTTAATGGGAAGCAGGAGCAGGCTCTGGAGGCCCTGCAGCTCTGTCTAAAACTCCAGGACTCCCGTAGCAGAGAGGAGCTCCGCAGACTCCTCCGCTTCATGGCTCTCGCTGCACAGCCAAATGACCTCAAACTGCACAAAGAGATAGAGAACAGGATGGCAGTGAAGAGAGCGTTCTCCAGTGCTATCGTGTACAGCGCCAGACTCGCCAAGGGAAAAGTGGATCTTTTGGTGCTTTTCATGATAGACAACCACTTGGATCTTTTCAAGATTCCTGTATCATTACACAAGCTTGTTAGTGATAAACTAGCCACCATCATCAAGGGCAAAGATCCTGATGTCCTTACAGGTCCATCTTACTGTAGACGTCTTTCGAGGACCACTTACATGCAGACAGTACAGAAAACCACTAAAGAGGAGCTGTTCACTTTACTCCGAACCATTCATGAGAACCCCAAACtttctgtaaaagaaaagcGGCGACTGCTCGGACAGTTCTACAGAGGCCATCCTGAGATATTCGTGCAGTATTTTGGCAACCAGATATCCAGTGCTTATCTGTAACACACTGCTTTACTGAAATGCGTTTGCACAAGATGTACAAAGTGACATGTAAATTCTGTAAAATGtcttgtaaatatgtaaaaaaaaaattttaatgttatttactttttatgCACGGATGCATGAGTTAACAAAGGTCAATGTGTAACATCATGCACCTTTTAATGcctgtattaaaaatatgaattatatttatCAGGCTTTTTTCAGACCTATAATGTAAATGGTTTTGTTCTGATGTGACTGTCCTCAAATGATGTGACCCTCATGGGCAtttgtacatgtttttcttGGTTCCTAAACACTGTCAATGAAATAGAgccatttataaataaatagtcttttttttttttaaatttacgcCAACCTATGA

Function

symbol description
depdc7 Predicted to be involved in intracellular signal transduction.

NR:

description
PREDICTED: DEP domain-containing protein 7

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913498.2 False 1919 mRNA 0.46 9 23765537 23781393
XM_026913499.2 True 2026 mRNA 0.45 9 23765537 23786329

Neighbor

gene id symbol gene type direction distance location
abcc5 abcc5,LOC107670605,LOC107671530 coding downstream 34122 23701784 ~ 23731415 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding downstream 87079 23634077 ~ 23678458 (-)
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding downstream 133170 23615371 ~ 23632367 (-)
mtif2 mtif2 coding downstream 183457 23578039 ~ 23582080 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding downstream 194515 23559123 ~ 23571022 (-)
qser1 qser1 coding upstream 7861 23794190 ~ 23815913 (-)
prrg4 prrg4 coding upstream 30354 23816683 ~ 23826844 (-)
eif3m eif3m coding upstream 48843 23835172 ~ 23843472 (-)
kifc3 kifc3 coding upstream 91378 23877707 ~ 23926937 (-)
cngb1a LOC108264061,LOC107717637 coding upstream 146569 23932898 ~ 23974188 (-)
G103820 NA non-coding downstream 189858 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 252209 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 435436 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 442125 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 490255 23270144 ~ 23275282 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 628571 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 747408 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1327648 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1405728 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 1452781 25239110 ~ 25241770 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 26758 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 65830 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 155089 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 1458768 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2752437 20995341 ~ 21013100 (-)
sipa1l3 sipa1l3 other upstream 693973 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 837187 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 845310 24631639 ~ 24661978 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 965324 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 1257457 25043786 ~ 25079512 (-)

Expression


Co-expression Network