caps2 (caps2)


Basic Information

Item Value
gene id caps2
gene name caps2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30700440 ~ 30710723 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913535.2
GTCAAAAGTAAATCTCTTGCTGCTGCTCAGAGGGAGTTTGATCTTTCGGACTTCATTACCCAAAATCCCTTTCGGTGACGGAGTTCTGGTCACGTGTGTTTTGTTGGTAATAATCTCCATAGTAACGCAGGAACGCTTGGGTTTTGCTTTGTGCTGTGTGAGCTGCAGCTTAAACACCGGAAATGGATCGGAGTTTAAAAGCGACAAGAAACTTGAGAGGAgtcagagctggagagagacagagagaaataagCGCTCCATCCCGCGGGCCGCGTCCACGAGAAGTTCCGGTTCTGGAGCTGCACAGACTCAGGGATGGAGAAGATGAAGATCCTGGTGTTGTTCCGGTGGCCGGAAGACCGTCAGCCGTGCTGTCGGCCCTGAGCTGGGGTTCAGCTTCGTCCTCCAGCACACCGCAGGAATGGGATGCTGGGATAGCGGCCACGCTGGAGGGACGTGTCTCTTTGCTAGCGTCTCCTCAGCACAGCTACagaaacctgaccatcagatCACACAGCAATCACAAAGCAAACATGGAACCACCTCATCTGAGCTCACACACTTTTCCTGAGCTCCatcacacacagccagacacGAGCCATGCCCGACCCAGGAAACTGGAAGCCGAGGGTGTGACGATGGAGAGGAGACGGCAGGCTGTGATGGAGCAGGTGATGGTGGACCAGCTCTCCAGAGCCGTCATCAGCGACCCGGAACAAAACTCTGCAAACTCGGTGAATATTTCGGCTCGTCACAAGAGGACGTTACACCACACaatggTGAAAACACCAAAATCTTTAACAGAGAAACTCCTGTCCTACAAACTCTGCTTTCATGCCAGGATTTTATCACGatgTGGGCGTGAGGCCTGTCGAGAGCTGACTGGCTTCTACTTCACATGTGATCAGACACTAACAGTGTACGAGTACCGCAGTTTTGGGAAGAACAGGTGTAATGCACTGCCATTTATTGTGCGTGGGGTTTATAGGACTCGAGGGAGACCATACTGTCTCTCTGACATCTCACAGGGTGAAAATCTGCGCTTCAGTACAGACGGACCCCACGTCCCCGAGAACCTGAGACAGCGGCCATATCTGACTCTCAGAGTCACTGATGTGGACGAAGAGGCCAAGAGTTCactactAGTCCAGTTTGGAGAAACTGAACATCATCCTTCCGAGGAGGAAATTAATGATCGGAAAACTCTAAAGGCGATTCAAGCGTCTGTACGTGAGAGGTTGAAGGGTCGCGCTATCCGAACTCTGATTGGTTTAGGGAGGAGGCTGCAGAGTTTAGACGTGAAGcagaacggcattgtgggtaaagaGCAGCTCGGAGAGTGTCTGATGGAGGAGCTGAGTCTCAGTCATCAGGAGGTGGAGGCAGTGTGGAGGGTCGTGGGGCTGCAGAGAGAGTTCATGGTGGACTACGCTGAGGTGATGTGCGCTGTGACCGGAGACATGAACGAGAGCAGAAAAGCTGTGTTTATAAAGgTTTACATTAAACTCGACCCCAATAAAACGGGTTCAGTTTCTCTGACTGATATTGAGAAATTTTACTGCGTTAATCAGCAGCAGACTGAACACGGAGCAGCATTAGACTTCCTCACGTGTGTACGGGACGCAGGAAGGGTCACTAAACACGTGTCTTATGCCGAGTTTCAGGACTATTATGAGGGACTGAGTATCGAAATCCCCAGTGACCAGGTTTACATCAACATCCTGAGGAGCACCTGGAAtatctgattgtgtgtgtgtgtgtgtgtgtgtgtgaatactaTTCTAACATTATAATTACtgtattaaagtgaaaaaatgtcttatttttattctgttattaAATCTGCTGagacatttgttttaaaaagctttttgatCAAACGACTCTTCTGTTGCTTGATGCAGGAAAAGTGATCTAGATAAACACATCATTTATGGTA

Function

symbol description
caps2 Orthologous to human CAPS2 (calcyphosine 2).

NR:

description
PREDICTED: calcyphosin-2

GO: NA

KEGG:

id description
K23909 CAPS; calcyphosin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913535.2 True 1939 mRNA 0.49 16 30700440 30710723

Neighbor

gene id symbol gene type direction distance location
cd9a cd9 coding downstream 75107 30614083 ~ 30625333 (-)
si:dkey-88e18.8 LOC108264158 coding downstream 91233 30604089 ~ 30609207 (-)
cfap161 cfap161 coding downstream 102696 30592721 ~ 30597744 (-)
utp15 utp15,LOC107559694,LOC107600050,LOC107735583 coding downstream 125765 30565402 ~ 30574675 (-)
calub calu,calub,LOC107600067,LOC105939814,LOC107735596,LOC107090546,LOC107662890 coding downstream 137594 30557595 ~ 30562846 (-)
si:dkey-30c15.10 LOC108264154 coding upstream 29744 30740467 ~ 30755090 (-)
pdp2 pdp2,LOC108423909 coding upstream 45726 30756449 ~ 30760179 (-)
si:dkey-30c15.2 LOC108264169 coding upstream 82217 30792940 ~ 30804496 (-)
LOC113524884 LOC108264165 coding upstream 139681 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 147206 30857929 ~ 30898090 (-)
G107550 NA non-coding downstream 230537 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 277102 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 293476 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 308982 30363627 ~ 30391458 (-)
LOC113526678 NA non-coding upstream 3395 30714118 ~ 30715453 (-)
G107800 NA non-coding upstream 100324 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 109986 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 117428 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 124911 30835634 ~ 30884613 (-)
G107525 NA other downstream 355564 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 986439 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3540341 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4092101 26569085 ~ 26608339 (-)
G105376 NA other downstream 4459435 26239330 ~ 26241005 (-)
bbs10 bbs10 other upstream 17321 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 74870 30785593 ~ 30849697 (-)
G107803 NA other upstream 105856 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 208461 30919184 ~ 30989204 (-)

Expression


Co-expression Network