kiaa1549lb (LOC108264854,LOC108433503)


Basic Information

Item Value
gene id kiaa1549lb
gene name LOC108264854,LOC108433503
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29599585 ~ 29657809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913638.2
gctcctgaATTCAGTGAGCGCCGGAGGAGAGCGGCAGGCTGCGGGAGCGCGCGACGCTTGGGTTGGGTTGGGTAGGGTTGGGTGACTCGCGGTTCCGGTTCGGTTCGGTTCGGACAGATGTCTCAGTCACGGAAACGGAAATGGCTTCCGGATCCAGCTCGAGGACTGCGCGAGGAGGAGagcaagaagaagaggaagagttCGTGCACGGAGCGCGCGACTGTGCGCGGAGATTCCGCCGCGCCTGGCGCTCCTCCGGGGCGCGTGTAGTGGGCGCGGGAGCGGGCGCGTGCCTGCGGCGGCGGAGCGGCAGAGGCGCGCGCGTGGGAGGCATGCTCGCGGGGTTAGTGCTGCTGCTGGTGCACGGTGCGCTCGCCAACCCCGATGAAACAAATTACGAGGCGTCTGGATCATTGGCATCAGCTCTGGACCAAGCAACCCTGTCCACCTCTTCTCTTCGGCCATCTGGTTTGCATATGACTGATGAGGGTCCCATCTCGGTCATCCATTCTGATCCTACAAGTCGACAAAGGGACATGAGAGAGAAGTCTCTATCAGCCAGAACAGCTGTGAAACCACAGATCACTCTTCATTCAGGCTCCACTCTGGAGAGTCCTGTTAAGGGCACCGACCAACCTAACCATTCACCTGCAGAAGGTTCTATTCAGAGAGCAGAGCCATCTTTTATGATCCCGTCCTCTGCTTTGGTGCACATTAGAAACCAGTCTTCTACTTCAGAGAAGTCTACGCTGGACCAGTGGATGTCCGGGCTTCCGTCCTCTGTCCTTACATCTCGAGAGACGAGGCTTCATGCAATAGGAAATGACTCTGGTTTACCTCCATTCCAAATGATAAGTCCTATATTACccaacaaaaatgtaaatgtctcaGTCCATTCAGAACCACTTACCCAGCAACTACCAACTAGCAATTTCTCTCAACTCACCACCACAACAGCTTCCACAACAAGTACCACAACCACACAACCGACCAGCACAACTCAGTTAACCAGCACCACAGGGACTACAACCACCACCACTACGGCAAAGCCTCCCGGAACTATAGCACCTACCGTGTCCCCTAAATGGCCCACCACCACCCAGCATGTCAGGACCAGTCCACCCagaaccaccaccaccaccactcaAAGTTCTCCACTCAGCTGCAACATAACTGACAGGATGTGGGTTAAAACAGTTCTGTCCATCCACATCCGGAGGAACCGGCTGGACAATATTTTGAAACAGAACCTTCCGAAAGGTCTGACTTTGGCACTGGCGAAGGCTCTGAATGACAGCGGTGCCCGTGCACAGATTGAAAGTCTGTCCACGGTGCACAACGTGACCGTGGGATATTACGTAACTCGTGGCGACATGGTCTACACCACGTCCGTCGTAGTGGAGGCTCTGAGCTCCTACGGCATGGACAGGCTGATGGCGGATATCCGGCAGTTTGTGCCCATGGTGCAGGCGGTGCCAATCCCAGCAGCCCCCTGGAGGCCTACTCCTGCTATTTCACTCATGCTGAAGACAGTTTTGAGATTTGTAGGACCGGGAGATGATCTGAGGTCCTGCAGGTTTGCTCAGCTGATGGAGGAGAGACTGGAGAACGCGTTTGCCGAGGCTGAGGCCAAAGTGCTGCTGAACGCTTACAGCACACTCAGCGTGCAGATTCTGAGTGTGTCTCAGTCGGCCGGTTCTCCTGCAGTATCTCTGATATACGTGGTGCATAACAGAACCGAGACCCTGAACGGCACCGTGGCCAGTAACCTGCTGAGCCGCCTGACTGCTGAGCTTGTGGGCTACTTCCTGTTTTACCCTCCGCTCATCACTGCAGAGcCTTTGGAGTACCACAACCTCAACACCTCAGCAGCTACCAAGGATTTCTGGGTAATCACAGTGATTCAGGACGTGGAGAACTCGTCTCTGGAGGGTCAGTACCAGAGCTTCGCCAGTCTGATGGAGCAGCGCTTGGCAGAGCTCTTTGTGGTAGCACATCAGCAGGGTGCCCGCTTTAAACGTGCCACTACGGTGGGCAGTTACACTGTTCAGATGGTTGGCATGAGGCGAGTGGTAGGTCCAAAAAACCCGGCTGAACTCACCTACTATGTGCAGTTGAATGGAATGCCACTCCCTGGTACAACTGCAGCGAAAATCCTGAACACTGTGGACTCTCAGACAATGGCTCTGACACTGGGATATTTTGTCCAGCTCCAAGCTGAAGCTGTGGTGAAGGGCCCTTCCAACAATCTCTGGATCATCGCCTCTGTTTTGGCTCCTATCGGCATtgtcaccatcatcatcatcatcatcaccgcTGTTCTTTGTCACAAAAACAAGAGCGACTTTAAAACCGACGGAATTGGCAACCTGAATCCACGGGTTAAGACGACTTACCGGAGAGACATGAGTTATTATCACCAGCCTGTTCAGGGTTTCGACTATGCGAAGCAGCATTTGGGTCAGCTGGGCGCCGACGAGGACAGCGCACCCCTTCCTCAGGCTCCGCTGCCGATCCGGGACGCCTCTCTCTCCATGGAAAAGGTCATCCACCCAGACGGCACCAACTCCAAAAAGACCCTCAGTGGCGAAATCCGGAAAAGCAGGTTGCCGAGCGAGGACGGTTCTGCGGTCAGCGTCGAATCGGCGAGGCCGGTCTCAGTACGAGGCTCCACGGTGAAGAAAATCACGACACAGCAAAGTCTCGTGAAGGAGGAAAGTAAGAAGCGGACCGATCCGTATGACACCTCATCAGGATCTCTGCAGCTCATCTCTGTAAAACCGATAGCAGCACCGCCGGCGTACTCGCAGCCAGCTTCCTCTGACCGCAGTCAAGATTCGGCTGTCCTGAATGGCGAGgTGAATTTAGCTCTGAAGCAGAAGTCTGACATCGAGCATTACAGGAACAAGCTAAGGCTGAAAGCCAAGAGGAAAGGCTACTACGACTTCCCATCAGCCGAGGGCAGCTCCAAGACTACGAGACACGGAAGCGACAAAGCCGAACACATCCCAGCTACACGACCGTCCAGCAGAACGCCAGAGTACGACGACGACCGGAGCTCCACGTATGTCAAATCACGCAGGAGACTCTCTGAGGTAAAATATCCAGAGTATCGGAGCAGACAATCTTTAAACAGCCCGAGTCCCGGGGGAACCGAGATGGACCTTCTGGTGATGAGAGAACGGCCACGGAAAGGCATCCGCAACAGCGGCTACGACACGGAGCCTGAAATCATTGAGGAGACCAACGTGGATGGCTTAGCTGCTCGCCGTCACTATGGCTATGGGCggcaggtcaaaggtcactcaGAGACATCCACACTGAGCTCACAGCCCTCTATAGATGAAGTGCGTCAGCAGATGCATCTGCTGTTAGAGGAAGCTTTCAGCCTGGCTTCTGCAGGTCATACCTCATCCAGCAGAAGGAACCACTACCACCAGCAGCACCAGGCGATTAGCCCTTACAGCCCCGGGCCTTCTATTCCCTACTCTGAGGGGCCAACTAGCGCACCTGACACCATGAGCCATGCCCAAGGTGGACTGCAGTGGGTACCAGCCTATGGCCATGACCTCTATCAGTGCAGCCTGAGCAAACCGaccttcaggttcacccaGCTGCCGGAGATGGTCACGgactctcctcctcctcccgtTCCTCCCAGAACAGGCCCAGCGCCCAGGAGCTCACTGCGGAGGTCTTCCTCAGATCTCGGCCCAAAAGCTCACAGCTCTGAATCATCTGTGCCAGACGTGCCGAGTCAGCAGGACAGCAACACATACGTGCCAATGAGCAGAGGGTCACTCCCACCTGTCACTACTGAGCCTGTACTCAaccactcagGAAACCCGATGACTGCTGTGTACGCCATCCCAGCCAGCAGGCCAGGCTACCCCGGCTACTTCATCTCCACTCCTCCTTCGTCCTATCACAGCCCCTCGTGGATGTCGTATCCCCCAGAGCCCGAGGACGTGTCTTCACCATGGACTGATTCTGTTCCGTTGCCAGGTTACGCAGAAGCTTTTCCGAACCCACGTTACCCTCGAGGAAGTCCTTTCCAGTGGAACCCCAGCCAGGCGGTGTCTCCTCCTCAGGGGGAACCCGATCAGCCGTTCTCTCTGTCCACCGAACCCGTGGACTTGATCACTCCCATCACGCTCTCCACCTCGGCTCTGGTCCAGGCCATCCGTGATGAGGTCGCCAAGCTGGCCAAAAAGCAAGCGGACATGTTTGAGTTCCAGGTCTAGAGCTCCCCCTGCAGAACTGGAGCACAAACTGCACTCTCGAGCTCTGGAGCTCTCTTCTTGCTGACTTTTGGTTAAAGCCAGGCTCCTGAATTTTCCTGGAAACTTCCATTCCTTAAAAGAACTTAAaggtgtatgtgttttatgaaAAGGCTGCCTGTTTATACAGCTTTGTCTCCTTTCCTACACCGGCATTATATTTTAGCATCAAGTAAAGCTTTTGGATAAAAGACAATATCAAATCCATCGCTACTTTCATATCTAACTCTAATTCCAAACACACAggaatgatgaatgatgatggttatgaaaaaaaaaagtttttttgtttccGCTATGCACAACTCAGCCAATCCATAAGTGCATACTTTTGTGATACATGTAGGGAATAAAATACTGGCATGGTGTAATGAAGCGGAGTTTCTTTTgctaccctgaagttgattagttttctataacagcatgtgagGGGCAtgatggctcagtggttagcatgtttggcTTGCA

Function

NR:

description
PREDICTED: UPF0606 protein KIAA1549L homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913638.2 True 4748 mRNA 0.54 23 29599585 29657809

Neighbor

gene id symbol gene type direction distance location
spon1a spon1,spon1a,LOC107741890 coding downstream 120153 29398604 ~ 29479432 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding downstream 230034 29345335 ~ 29369551 (-)
ppfibp2a LOC108264606,LOC108434021 coding downstream 268632 29294886 ~ 29330953 (-)
mafa maf,LOC102790406,LOC101173775,LOC102192535,LOC102298902,LOC100702616,LOC107381304 coding downstream 394142 29192381 ~ 29205443 (-)
LOC113526432 cdyl2,LOC106562298 coding downstream 746949 28808107 ~ 28852636 (-)
lrch3 lrch3,LOC103027580 coding upstream 69281 29727090 ~ 29766747 (-)
luzp2 luzp2,LOC107746562,LOC107739427,LOC107656854 coding upstream 313658 29971467 ~ 30064366 (-)
tspan4a tspan4,LOC106561924 coding upstream 479202 30137011 ~ 30256084 (-)
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding upstream 697712 30355521 ~ 30359530 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding upstream 769371 30427180 ~ 30433055 (-)
LOC113526826 NA non-coding downstream 319402 29273077 ~ 29280183 (-)
G106951 NA non-coding downstream 396741 29202007 ~ 29202844 (-)
G106772 NA non-coding downstream 794155 28805033 ~ 28805430 (-)
G106713 NA non-coding downstream 820567 28764739 ~ 28779018 (-)
G106705 NA non-coding downstream 837848 28761518 ~ 28761737 (-)
G107193 NA non-coding upstream 22454 29680263 ~ 29707900 (-)
G107191 NA non-coding upstream 66305 29724114 ~ 29724377 (-)
G107210 NA non-coding upstream 107567 29765376 ~ 29844857 (-)
G107217 NA non-coding upstream 264933 29922742 ~ 29923193 (-)
G107510 NA non-coding upstream 652038 30309847 ~ 30311846 (-)
si:dkey-151j17.4 NA other downstream 2439486 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 2991246 26569085 ~ 26608339 (-)
G105376 NA other downstream 3358580 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 4050657 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 4520073 25043786 ~ 25079512 (-)
G107525 NA other upstream 685722 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 1070235 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 1127784 30785593 ~ 30849697 (-)
G107803 NA other upstream 1158770 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 1261375 30919184 ~ 30989204 (-)

Expression


Co-expression Network