rasa2 (rasa2,LOC108264552)


Basic Information

Item Value
gene id rasa2
gene name rasa2,LOC108264552
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20489540 ~ 20536022 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913853.2
AGAGTTgcgctcagtactcagtgaatGTAGCTACTgtacacgcacagacacacatacatacacacacgcacacacacacacatatatacacacacatacacacacagtcactcactcatacacaaaGCTTTGACCATGGCGGAAGAAGACGAGACGAAAATCCGGATTCTACAAAGTCTGCGAGGGAAAATCTgtgaaGGCAGGAACCTAGGTATCGGTTCTGGATCAAATCGTCTCCGAGACATTGGTACATTTTGCACCATCAGTCTGGACCAGGAGGAAGTGTTCCGCACTAAAGTGTATGACAGGAGTCTGAGcCCGTTTTATGGGGAAGATTTCTACTTTGAGATCCCTCGGCCGTTCCAGTGTCTGTCCTTCTACGTTTACGCCAAGAGTGTATTTCAGAGGGACCTGACCATCGggaaGGTGGCTCTCAGGAAGGAGGAGTTGTGTAATTACAGTGGGAAGGAGCACTGGTTCCCACTGCAGCCTGTGGATGCAAACTCAGAGGTGCAGggGAAGGTTCATCTAGAGATGAAGCTTAATGAAGTGATCACAGATAACGGGCCTGCCTCTTCGCGCCTGCAGGTCAGgaTAATCGAGTGCCAGGGTTTACCGTTAATCAGTGGGCAGGCCTGCGACTCTTACGCTTCTGTAACACTCATCGGCCCTGCAAgGTCAGATCAGAGGAAAACGAAGGTGAAGAAGAAAACCAGTGACCCTCACTTTGATGAGACAATTTACTTTGAGgtttccAGGGCAAGCAACTACAACAGGAAGAACTTCCAGGTAGAGGATGAGGACATTGAGAAGCTAGAGATCAAGGTGGAGTTATGGAATAATGGGAATCTGGCTCAGGATGTGTTTCTGGGTGAAACAAGAGTGTCAGTGAAGATCCTGAGAAATGACCTCGTACACAAAGCTTGGTATCTCCTCCAGCCGAGAGGTAATGGTGTGAAGTGTAAGCCTGATGATCTCGGCTCTTTGCGTTTAAACGTGTGTTACACTGAGGACAACGTGCTGCCATCAAACAGCTACATTAACCTGAGAAACCTACTGCTCAAATCACCTGAcgtacagCCAATCTCAGCATCTGCTGCTCATATTCTGGGTGACGTGTGTAGAGATCGATCGGAAGCCTCACTGCCTTTAGTGCGACTTTTACTGCATAACAACAGACTGCTGCCTTTTCTCATGGCTATTGCTGCCTTAGAGCTGGAGAACACAcaAGAGGCGAACACCATCTTCCGTGGGAATTCTCTGGCCACACGCTGTATCGATGATATGATGAAGATGGTGGGACGGAATTATCTGAACATCACACTGAAGCCTGTGCTGGATGAGatttgtgaATCCAATAAAACATGTGAAATCGATCCAATCAAACTGAAGGAGGGAGATAACGTTGAGGTCAACAAGgagaacCTGCAGATCTATGTTCAAAAGGTGTTCTCGTCCATTACGGAGTCAAGTACGAGTTGTCCACCTCTGATGTGTGACGTTTTCCAATCCCTACGTCAGCTCGCCTCTGACCGCTTTCCCAGTGATCCTCATGTTCAGTATTCTGCGGTGAGCAGTTTTGTGTTCCTGAGGTTTTTTGCTGTAGCTGTGCTCTCTCCACACACCTTCCAGCTGCGGCCACACCATCCAgATCCAGAAGTTTGCCGAACTCTCACACTCATCTCTAAAACCATCCAGACGCTGGGCAGCTGGAGCAGCCTGTCTAAAAGCAAATTGTCGAGCTTCAAAGAGACCTACATGTGTGATTTCTTCAAATTATTCCAGGAAGATAAATGTATAGAGAAAGTGAAGAAGTTTTTAGATGACATCTCATCCAACGTGTGTAAAGGCACCAGCGGAGCAGAAGATTCGGTTGTGCTGAAAGAGGGagaGGTCCACAAGCGAGCCCAAGGTAGAAAGCGTCTAGGGCAGAAGAACTTTAAGAAGCGATGGTTGAGAGTGACCAGTCGAGAGCTGTCATACCATAAACAAAAaggGAAATGTCCACTCTGTGTGATTCCTGTAAAGAGCATCACAGGAGTAGAAAAAGTGGATGAGAGCACCTTCAACCGCAAAAACaTGTTCCAGGTGATCTTCAGTGATAAGCCCCTGTATGTCCAAGCAGGTAACTGTGTTGAGGCGAGTGAATGGATCGATGTGCTGACTCAGCTCATCCGCTGCAATACTGATCGACTTGGTGTGTTCCATCCGGCTGTCAGCAGCAGAgacagcaCACTGGCGAATATCCAGCTGGAGATTGACTgcgacagagagacagagaggattTTCTCGCTGTTCAGTGCCAGTTTACCCCGTCTGCAGAAAATGGAGGatgccTGTGCCAGTATGTCGGTGTACCTGGGCCAGCAGAAGGAGCAGGAGGAGTACTCTGCCTTCGTTATTCAGGACCCGAAGGAGACGTTCCGCACCATTAAGGAAATCAAAGAAGTCCTGGAGGACCTGCAGCTCAAACACAATGCCATCGAGCTCACAGACCAGCCAGGGacaatTGAGAATCCGATCGTGGGGAAGAGGTCCTGACGCTCCCTCCACACCAGCAGGTGACACTGCCCAAAGCCAGACGCTGAGACACACTCAGTGAGGAATGGAGTGATGGCTGCAGGCTCACAATGAAGAAAAAGACTGATGGAGAGAATCAGCGACTCTCACACTCCATGCTGCGCCTTAAATCACCTCTGACAAACGTGTGTTAGACTTTTTTCACTGAGATAAGCACGCACGATCTCGATCAGAATGCTGTGACGGATGAGACTCCACCAGTGATACGAGAATATGAATATGGCTGCTAACCAGAAGAACTTGACCTCCAGTTTGAAAACAATCGTTTAAAATCCTTCCACATTTTATAGGCCTTCGATGTCTGATGTCTTTGATGTGCATCAAAGGGAATTTTCCCAACTTTTTCTATTCTGTCTTTTATATTCGTACATGGACTGTGTGGATGTGCGTACACACTCATTTTTggaatagacacacacacacacacacaaatggcaCTTTAGGCATTTGGATTAATCCAGATGAGTATATTTGATACACTGTATCATCACTTGATTGATCAGTTGAATGATCGCATCATTATAACGCTTGTCTCTGTAAAGTTTGTAATTGATATGTTTCTCATGCCAAAGACAATTTGTCGGATTGATGATGTGTAAATGGCATTATTTTTGGAATACTCACCTTTAAAAGATGATCTATATTTCtcatgtcacaaaaaaaaaaaaaaaacataatttgtgATGAA

Function

symbol description
rasa2 Is expressed in margin. Orthologous to human RASA2 (RAS p21 protein activator 2).

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG:

id description
K08053 RASA2, GAP1M; Ras GTPase-activating protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913853.2 True 3268 mRNA 0.46 24 20489540 20536022

Neighbor

gene id symbol gene type direction distance location
polr2i polr2i,rpb9 coding downstream 4739 20480826 ~ 20484801 (-)
pglyrp5 LOC108264553 coding downstream 13270 20473179 ~ 20476270 (-)
foxg1c NA coding downstream 18451 20470360 ~ 20471089 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 24855 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 36393 20422273 ~ 20453147 (-)
zbtb38 LOC108264297 coding upstream 5621 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 30718 20566740 ~ 20572429 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding upstream 284784 20820806 ~ 20845204 (-)
LOC113526481 NA coding upstream 388956 20924978 ~ 20929950 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding upstream 477213 21013235 ~ 21020541 (-)
G102449 NA non-coding downstream 10984 20478333 ~ 20478556 (-)
G102444 NA non-coding downstream 16795 20471871 ~ 20472745 (-)
G102434 NA non-coding downstream 129999 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 132943 20282185 ~ 20356597 (-)
G102271 NA non-coding downstream 226400 20257332 ~ 20263140 (-)
G102472 NA non-coding upstream 42668 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 102849 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 459503 20995525 ~ 21003780 (-)
G102691 shkbp1 non-coding upstream 587293 21123315 ~ 21124955 (-)
G102809 NA non-coding upstream 773281 21309303 ~ 21312468 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 72966 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 509281 19980069 ~ 19980259 (-)
G101178 NA other downstream 2292734 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5131977 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6142532 14335936 ~ 14347008 (-)
G102566 NA other upstream 417580 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 459319 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1695426 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3054923 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3112662 23648684 ~ 23699707 (-)

Expression


Co-expression Network