ap2m1b (ap2m1b,ap2m1,LOC108264350,LOC108440593)


Basic Information

Item Value
gene id ap2m1b
gene name ap2m1b,ap2m1,LOC108264350,LOC108440593
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23615371 ~ 23632367 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913881.2
AAATACCGCTGTTGGTGAGGAGGGAGCGGTCGGCCATCTTGAATAGAATGACTGATCAGTGACCGCTATAGTGTACCAGAGCTCACTGAATAACAAGAGCTTTGTAGCTGCGGCTCTTTGGGCGACACCGGCCCGGTTTCGTGGCAGTCAGACAGTCACCTGAGTTCTCACCATGGCACTGGAACACTGAGAGAGAGCGCCACCATGATCGGAGGACTTTTCATCTACAACCACAAGGGCGAGGTGCTGATCTCGCGCGTCTACCGCGATGACATAGGGAGGAATGCTGTGGATGCATTCCGAGTTAATGTGATCCACGCACGCCAGCAGGTCCGCTCGCCCGTCACCAACATCGCACGCACCAGTTTCTTCCATGTCAAGCGCTCCAACATCTGGCTGGCTGCAGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACCGCTTACTTCGGCAAGATCAGTGAGGAGAACATCAAAAACAACTTTGTGTTGATCTACGAGCTGTTAGACGAGATCCTGGACTTTGGATACCCACAAAACTCTGAGACCGGAGCACTGAAGACCTTCATCACTCAGCAGGGCATCAAGAGCCAGCATCATACTAAAGAAGAGCAGTCTCAGATCACCAGTCAGGTGACTGGGCAGATCGGATGGAGGCGTGAGGGCATCAAGTACCGTCGCAACGAGCTCTTCCTGGATGTTCTGGAGAGTGTGAACCTGCTCATGTCACCCCAGGgtcaggTACTGAGCGCCCATGTCTCAGGCCGTGTGGTGATGAAGAGCTACCTGAGCGGCATGCCAGAGTGCAAGTTCGGCATGAATGACAAGATTGTCATCGACAAGCAGGGCAAAGGGGGCACTACTGACGATGCAGGCAAGAGCAGTGGGAAGCAGTCTATAGCCATCGATGACTGCACCTTCCACCAGTGTGTGCGACTCAGCAAGTTTGACTCGGAGCGCAGCATCAGCTTTATCCCACCGGATGGAGAGTACGAACTCATGAGGTATCGCACCACCAAGGACATCATCCTGCCGTTCCGCGTCATTCCTCTGGTAAGAGAGGTGGGACGCACAAAGCTGGAGGTGAAGGTGGTCATCAAGTCCAACTTCAAACCGTCACTGCTGGCCCAGAAGATTGAGGTGCGCATTCCCACCCCACTCAACACCAGTGGTGTGCAGGTGATCTGCATGAAGGGAAAAGCCAAGTACAAGGCCAGTGAAAACGCCATCGTGTGGAAgatcaAGAGGATGGCTGGTATGAAGGAGTCACAAATCAGTGCTGAGATTGAGCTGCTGCCCACCAATGACAAGAAGAAGTGGGCTCGTCCACCCATCTCCATGAACTTTGAGGTGCCCTTCGCCCCGTCCGGACTCAAGGTGCGCTACTTAAAGGTGTTTGAGCCGAAGCTGAACTACAGCGATCACGATGTGATTAAATGGGTTCGCTACATCGGCCGCAGCGGCATCTACGAGACCCGCTGCTAACAGCGGCTCCTCCGGCTCAgtcaggaggagagagaggggctGACGAGGAGAGATGAACCAGTGGAACCTCGCTGGAGGAGGTGCAGAAGAGGCTTTCccttcatctctctccctcccttcccCTCCTCTTCCCCTTTTcctgtgttcacactgacaacgaaaatgaaagatgaaaataataattggtCATTCAGAAATAATGTCTAgtggagaaaacagaaaaaggttCAAAATAAGTTTAGATATCTTTGATAATATGAAAGATGCATTTTGCTTCATTATGCATACTTACCTGCTATAAGACGAGGCCCCCTTTCCATCGGGCCCACCCATTCTTCTTCGTTTTAAGCATTCCAGACCCCTCGCTGATTGATTAATGGAGGATTTAGGCTTATTCTCTCTGTTTAACGATAAGCAGTGAACCTGTGCTTCTGTTCTCAGGCCTCATCAGTGCttcattttcctctttctcacgAGATCATTTTCCACTTGTGTGGTTGTATTTTCCGCTCTGGTGTAGTCGGCTAAACTGTGCGTCcctctttccttcatttttattcatgagtttttccctccttttttttttttttttttttttttttttttttaaattaaatcctaATCCCCAAGTGTATTAGTTAGCTGTTGTCCATGTTTTGTAGGCAGTGTTTTATTGTATGCATCAATACTCTTGCCCCAACTTGTATCACTTATCCTCCTTCATCTTCCTCTCTGTCAGTATTTTGCTTCAGATATAGTTTTTCATATGGATAATAATGAGGAAATGTTGTCTGCTTTGGTCTCTGATGTTTCACTTTTATCTGTGTGACCAAAATTCTCAGAAATGAGGAACTATGATCTTAAAGTACTATTGCTAGAATAAATgcagctgtgtgtctgtgtatacaaACTCTATACACCATAAAGGGGTAAGAAGTGACCTGCCAGGCTGATGTTTCAGCTTCGTGTCTGTAGAGGAGGTTTATTCAGGCTggttatgtgtatgtgtgtgagagagactgagcCTCTGTAAGCAGAGGGTCCCCCAACATCTCTCAGGAATCTTCTTCCCTCGAGTGTGCTAGCGTGTTTACCAGGTTGTTTACCAGATGTTTACGGCGGACCAGTGGGATTCCTCCAGTGCACTGATATGTATCTTCCCATATCCCCTCCCCTAGTTTACTCTGAGATTTTTATGGCACAAATGTGGAGGCACAGCAATGAGTGCagctttgaagaaaaaaaacggGCTATTGGAATTTCTTTGGAACTAAATCGGAGCGCCGATTTCAAGGAAAGATTTCCAGGAATCTCTTTCAGCCCAGTCAGAAATAGTAGAACGTAGCACTGAGCTGAGTTCTGCTTCTCTCACTCTATCCTCTcagtctgatacacacacacacacacacacacacacacacacacacacacaaacacactattcAGTAACA

Function

symbol description
ap2m1b Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1).
ap2m1 Enables signal sequence binding activity and transmembrane transporter binding activity. Involved in several processes, including negative regulation of protein localization to plasma membrane; receptor-mediated endocytosis; and regulation of vesicle size. Located in clathrin-coated pit. Part of AP-2 adaptor complex. Implicated in autosomal dominant non-syndromic intellectual disability.

NR:

description
PREDICTED: AP-2 complex subunit mu-B

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K11826 AP2M1; AP-2 complex subunit mu-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913881.2 True 2969 mRNA 0.48 12 23615371 23632367

Neighbor

gene id symbol gene type direction distance location
mtif2 mtif2 coding downstream 33291 23578039 ~ 23582080 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding downstream 44349 23559123 ~ 23571022 (-)
dcun1d5 dcun1d5,LOC107712802 coding downstream 57837 23547392 ~ 23557534 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding downstream 79691 23513393 ~ 23535680 (-)
myo7aa myo7a,myo7aa coding downstream 111074 23455693 ~ 23504297 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding upstream 1710 23634077 ~ 23678458 (-)
abcc5 abcc5,LOC107670605,LOC107671530 coding upstream 69417 23701784 ~ 23731415 (-)
depdc7a depdc7,LOC107576633,LOC107758055 coding upstream 133170 23765537 ~ 23786329 (-)
qser1 qser1 coding upstream 161823 23794190 ~ 23815913 (-)
prrg4 prrg4 coding upstream 184316 23816683 ~ 23826844 (-)
G103820 NA non-coding downstream 39692 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 102043 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 285270 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 291959 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 340089 23270144 ~ 23275282 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 782533 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 901370 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1481610 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1559690 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 1606743 25239110 ~ 25241770 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 4923 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 1308602 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2602271 20995341 ~ 21013100 (-)
G102566 NA other downstream 2648461 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3198797 20395866 ~ 20416574 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 16317 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 100503 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 847935 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 991149 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 999272 24631639 ~ 24661978 (-)

Expression


Co-expression Network