mtif2 (mtif2)


Basic Information

Item Value
gene id mtif2
gene name mtif2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23578039 ~ 23582080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913976.2
GCCGGAAGCTTTGGGACGGTAGGAATTCAAAGTCAATTGGTTAATGCTTCATGCCATGATTAAGAGGTTTTCTGTCCTGATCGGGAGGGCATCAGCCCATTGCCTTGATGTTCCACTATACACTCCCCATCATGTACGATACCTGGCTGCTAAACCGGATAGAGTACATGGAAAAGCTAAGAAGTTTATCCTGAAACCAGTGAAATTAGAGAAACAGGAGAAGCAAGAAGTGGAGATCAAACAGTCTATGACTGTGTCTCAACTTGCTGAGGCTATGAACAAAGACATAGATCATGTATATGAGGCCTTACTGAACACAGCTATAAATATCAATGATCTGGAACCAGACACTGTGTTGGAGGAGAAGTGGCTAAAAGAGGCTATAAAGAGGTCTGGGATGAAGTATAAATGGGCCAAGATAGTGGAGAATGAAGTCAGAGAAAACAAAGATGTCCAGAGACAACCACCACCAGATCCTGCTAGTTTAGTGAACAGACCTCCAGTAGTAACTATTATGGGGCATGTGGATCATGGGAAGACCACGCTGCTGGACAGCCTGAGGAAGAGCCAGATTGCTGTACAAGAGGCTGGAGGCATCACGCAACACACTGGAGCGTTTCTGGTCCAGCTTCCTTCTGGTGAACTCATTACGTTTCTGGACACCCCTGGACATGCAGCGTTTTCTGCTATGAGGGCTCGTGGTGCCTTGGTTACTGACATCATCATTCTGGTGGTTGCAGCTGATGACGGAGTGATGAAGCAGACCATCGAGTCCATACAGCATGCCAAGAAAGCCAAAGTGCCAATCATTGTGGCAGTGAATAAATGTGATAAGCCTCAGGCAGATCCCCAGAAAGTGAAACAAGCTTTGCTGGCCCatgatgttgtgtgtgaagagtTTGGAGGAGACGTCCAGGCTATCCATTTGTCTGCTTTAAAGGGGGAGAATCTGATGGAGCTGGCTGAAGCCACAGTAGCACTTGCTGAGATGCTGGAACTGAAAGCTGACCCTAAGGGTCTAGTAGAGGGGACTGTCATTGAAAGCCATACAAGCAAGGGCAAAGGATCTGTAACCATGGCAATAATCAAACGGGGCACTCTAAAGAAGGGCTGCATACTGGTGGCAGGAAAGGCCTGGGCTAAAGTGCGCTTAATGTTTGATGAGAACGGCCGAACTGTGACAAACGCAGGGCCTGGCATTCCTGTAGAGATTGTTGGCTGGAAGGAACTACCTTCTGCTGGTGAAGAAATTCTGGAGGTGGAGTCGGAGCAACGGGCTCGGGAGGTAGTGGAGTGGCGCACATACATGGAAGAACAGAACAAGTTGAAGGAGGATCAGCAAGCCATCGAGGCCAAGCAGAAGCAACACCAAGAGAGCTatcagaaagagagggagagactggCGCATCTCAACTGGAGGCAGAGGAAAGTTGCTCTCTACAAGGCCAACAAGCACCATATAGCCTCCAGACCCAGTGAGAAAACCGAGGCTGAGGATCCCAGTCTGAGTCTCATTGTCAAAGGTGATGTTGATGGCTCAGTGGAGGCAATTTTGAACATTCTTGCAAGTTATGATGCAGAGGAACAGTGTGTCTTAAATATAGTGCATTTTGGTGTTGGGGATATCTCAGAAAATGACATTAACATGGCAGAGACGTTCTCAGGAATAATATATGGTTTCAACATTGGCGCTAATAAGTCAATACAAGACATGGCTGCCAAGAAGGGCATATCCTTAAAGATGCATCGTGTCATCTACCATCTGATAGATGACCTGAAAGAGGAGCTTAGCAGTAAACTGCCCCCAACCACTGAGGAGAATATAGTAGGAGAAGCATCTGTTCTGGCCACATTTGATGTGACTGTAGGGAAGAAGAAGGTCCCAGTGGCTGGCTGCAGAGTCCAGAAGGGCCAACTGGACAAGAAGATGAAATTTCGACTCGTTCGAGGGAAAGAGGTTCTTTGGGAAGGGGCATTGACTGCACTAAAACATCACAAAGATGATGTGCAAGTTGTGAAGACAGGCATGGAGTGCGGTCTGTCTTTGGACAAAGCTATTGACTTTAAAGCTGGAGATGAAATAATCTGTTATGAGGAAACAGAGAAGCAGCAGAGAATATCTTGGGATCCAGGGTTTTAAGAGACTGCCCctgtcagtgacatcaccagcaTGTGGTGTTCAAAATAGTTATTCTGTCAGGTTATTATGTCCATATAAGGATGTGACTGGCAAGTTGTGTAAATTATTccatgattaaaataaatgggtttaaaaaaagtggGAAAGGTATCTAGTAGCAATCTAAttcatttag
>XM_026913977.2
ATAAGCCGGAAGCTTTGGGACGTGCCATGATTAAGAGGTTTTCTGTCCTGATCGGGAGGGCATCAGCCCATTGCCTTGATGTTCCACTATACACTCCCCATCATGTACGATACCTGGCTGCTAAACCGGATAGAGTACATGGAAAAGCTAAGAAGTTTATCCTGAAACCAGTGAAATTAGAGAAACAGGAGAAGCAAGAAGTGGAGATCAAACAGTCTATGACTGTGTCTCAACTTGCTGAGGCTATGAACAAAGACATAGATCATGTATATGAGGCCTTACTGAACACAGCTATAAATATCAATGATCTGGAACCAGACACTGTGTTGGAGGAGAAGTGGCTAAAAGAGGCTATAAAGAGGTCTGGGATGAAGTATAAATGGGCCAAGATAGTGGAGAATGAAGTCAGAGAAAACAAAGATGTCCAGAGACAACCACCACCAGATCCTGCTAGTTTAGTGAACAGACCTCCAGTAGTAACTATTATGGGGCATGTGGATCATGGGAAGACCACGCTGCTGGACAGCCTGAGGAAGAGCCAGATTGCTGTACAAGAGGCTGGAGGCATCACGCAACACACTGGAGCGTTTCTGGTCCAGCTTCCTTCTGGTGAACTCATTACGTTTCTGGACACCCCTGGACATGCAGCGTTTTCTGCTATGAGGGCTCGTGGTGCCTTGGTTACTGACATCATCATTCTGGTGGTTGCAGCTGATGACGGAGTGATGAAGCAGACCATCGAGTCCATACAGCATGCCAAGAAAGCCAAAGTGCCAATCATTGTGGCAGTGAATAAATGTGATAAGCCTCAGGCAGATCCCCAGAAAGTGAAACAAGCTTTGCTGGCCCatgatgttgtgtgtgaagagtTTGGAGGAGACGTCCAGGCTATCCATTTGTCTGCTTTAAAGGGGGAGAATCTGATGGAGCTGGCTGAAGCCACAGTAGCACTTGCTGAGATGCTGGAACTGAAAGCTGACCCTAAGGGTCTAGTAGAGGGGACTGTCATTGAAAGCCATACAAGCAAGGGCAAAGGATCTGTAACCATGGCAATAATCAAACGGGGCACTCTAAAGAAGGGCTGCATACTGGTGGCAGGAAAGGCCTGGGCTAAAGTGCGCTTAATGTTTGATGAGAACGGCCGAACTGTGACAAACGCAGGGCCTGGCATTCCTGTAGAGATTGTTGGCTGGAAGGAACTACCTTCTGCTGGTGAAGAAATTCTGGAGGTGGAGTCGGAGCAACGGGCTCGGGAGGTAGTGGAGTGGCGCACATACATGGAAGAACAGAACAAGTTGAAGGAGGATCAGCAAGCCATCGAGGCCAAGCAGAAGCAACACCAAGAGAGCTatcagaaagagagggagagactggCGCATCTCAACTGGAGGCAGAGGAAAGTTGCTCTCTACAAGGCCAACAAGCACCATATAGCCTCCAGACCCAGTGAGAAAACCGAGGCTGAGGATCCCAGTCTGAGTCTCATTGTCAAAGGTGATGTTGATGGCTCAGTGGAGGCAATTTTGAACATTCTTGCAAGTTATGATGCAGAGGAACAGTGTGTCTTAAATATAGTGCATTTTGGTGTTGGGGATATCTCAGAAAATGACATTAACATGGCAGAGACGTTCTCAGGAATAATATATGGTTTCAACATTGGCGCTAATAAGTCAATACAAGACATGGCTGCCAAGAAGGGCATATCCTTAAAGATGCATCGTGTCATCTACCATCTGATAGATGACCTGAAAGAGGAGCTTAGCAGTAAACTGCCCCCAACCACTGAGGAGAATATAGTAGGAGAAGCATCTGTTCTGGCCACATTTGATGTGACTGTAGGGAAGAAGAAGGTCCCAGTGGCTGGCTGCAGAGTCCAGAAGGGCCAACTGGACAAGAAGATGAAATTTCGACTCGTTCGAGGGAAAGAGGTTCTTTGGGAAGGGGCATTGACTGCACTAAAACATCACAAAGATGATGTGCAAGTTGTGAAGACAGGCATGGAGTGCGGTCTGTCTTTGGACAAAGCTATTGACTTTAAAGCTGGAGATGAAATAATCTGTTATGAGGAAACAGAGAAGCAGCAGAGAATATCTTGGGATCCAGGGTTTTAAGAGACTGCCCctgtcagtgacatcaccagcaTGTGGTGTTCAAAATAGTTATTCTGTCAGGTTATTATGTCCATATAAGGATGTGACTGGCAAGTTGTGTAAATTATTccatgattaaaataaatgggtttaaaaaaagtggGAAAGGTATCTAGTAGCAATCTAAttcatttag

Function

symbol description
mtif2 Predicted to enable GTP binding activity; GTPase activity; and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Orthologous to human MTIF2 (mitochondrial translational initiation factor 2).

NR:

description
translation initiation factor IF-2, mitochondrial

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K02519 infB, MTIF2; translation initiation factor IF-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913976.2 True 2315 mRNA 0.46 3 23578039 23582076
XM_026913977.2 False 2286 mRNA 0.46 3 23578039 23582080

Neighbor

gene id symbol gene type direction distance location
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding downstream 7017 23559123 ~ 23571022 (-)
dcun1d5 dcun1d5,LOC107712802 coding downstream 20505 23547392 ~ 23557534 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding downstream 42359 23513393 ~ 23535680 (-)
myo7aa myo7a,myo7aa coding downstream 73742 23455693 ~ 23504297 (-)
aqp11 aqp11 coding downstream 237658 23334177 ~ 23340381 (-)
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding upstream 33291 23615371 ~ 23632367 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding upstream 51997 23634077 ~ 23678458 (-)
abcc5 abcc5,LOC107670605,LOC107671530 coding upstream 119704 23701784 ~ 23731415 (-)
depdc7a depdc7,LOC107576633,LOC107758055 coding upstream 183457 23765537 ~ 23786329 (-)
qser1 qser1 coding upstream 212110 23794190 ~ 23815913 (-)
G103820 NA non-coding downstream 2360 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 64711 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 247938 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 254627 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 302757 23270144 ~ 23275282 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 832820 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 951657 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1531897 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1609977 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 1657030 25239110 ~ 25241770 (-)
si LOC108264758,LOC108431149 other downstream 1271270 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2564939 20995341 ~ 21013100 (-)
G102566 NA other downstream 2611129 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3161465 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3597780 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 8865 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 66604 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 150790 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 898222 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1041436 24623516 ~ 24711368 (-)

Expression


Co-expression Network