capn5a (capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851)


Basic Information

Item Value
gene id capn5a
gene name capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23513393 ~ 23535680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913998.2
CAAAATGGCCCCTCCCTGCTGAGAGTCGGGAGGAGGAGATAATcacaaacaaaccaaactaAGCGCTGTGCAGCGGAGTGTGCTGGGAGGTCCCCCTGGGGAGAAACAAGACTCATTAGGGACGGAGGACACTTTACAGGCACACTATGTTCTCCTCAGTCAAGCCCTTCGAGGACCAACAGTTTGCCACTCTGAGGAAACAATGCCGGCAGAATGGGAGGTTGTTTGAAGACCCACTCTTCCCCGCCGAGGACCGTTCGCTCTTCTACCACGGCAACCGCATCGGCAAAGTCACATGGAAGAGGCCCAAGGAACTCTGTGATGACCCACACCTGTTTGTCAATGGCATCAGTGCTCATGACCTGCAACAGGGGCAACTGGGAAACTGCTGGTTTGTAGCAGCCTGTTCCAGCCTTGCTTCCCGAGAGGCCCTGTGGCACAAAGTGATTCCAGACTGGAAGGACCAGGAATGGGAGAAAGACAAGCCAGAGGCTTATGCTGGGATCTTCCACTTTCGGTTTTGGCGTTTTGGAGAGTGGGTGGACGTGGTCATTGATGATCGGCTGCCCACCACCAACGGCCATCTGATTTACTGCCATTCTAACGACAGCAATGAGTTCTGGAGCGCACTGGTGGAAAAAGCCTACGCCAAGCTTTATGGCTGCTACGAGGCTCTGGATGGCGGAAACACAGCCGACGCGCTGGTGGATTTTACCGGGGGCGTCTCAGAACCCATTGACCTGCTGGAGGGCCACTTCAATCAGGACGAAGAAGCACGCAACCAGCTGTTTGAGCGTGTCCTCAAAGTCCACAACAGAGGAGGCCTCATCAGCTGCTCCATCAGGGCGACCTCTCAGGCCGACATGGAGGCTCGGCTGGAATGCGGTCTGGTCAAAGGTCATGCATATGCAGTGACAGACGTGCATAAGGTGCGTCTGGGCCACGGTCTGCTCGCCTTCTTCAAGTCTGAGAAGCTCACCATGATCCGCATGAGGAACCCGTGGGGGGAGAAGGAGTGGAACGGGCCTTGGAGTGACAGCTCAGAGGAGTGGCAGAGGGTCAGTAAGAGTGAGCGGGAGAAGCTGGGAGTAACTGTGCGGGACGATGGTGAATTCTGGATGACCTTTGAGGATTTCACTAAGCACTTCACAGACCTGATCCTGTGCCGCCTCATTAACACATCATACCTGAGCATCCATAAGACCTGGGAAGAGGATGTGAAGTTTGGCTCCTGGTCTCGGCACGATGATTCTCTGAAGAACCGCTCTGGAGGCTGCATTAACAACAAAGCCACGTACCTTCAGAACccacagTATTTGTTTGATGTGAAGAAGCCAGAGGATGAAGTTTTAATCTGCCTACAGCAGAAAGATAAAAGATCTCAACTTAAAGAAGGCAAAGGAGAGAACTTGGCAATCGGCTTCGACATTCAaaggGTGGAGCTGAATAGGATCTACCGCATGCACAAGCCACAGCAGAAGATGTGCAGCTCTGTCTACATCAACTCTCGCAGCGTGTTCCTGCGCAAGGACCTGAAAGAAGGCCGTTATGTTATCATCCCAACGACCTTTGACCCTGGACTACAAGCAGACTTCATGTTACGAGTCTTCACAGATGTGCCTTCAGAGTGCAAagaaCTGTCCCTGGATGAGCCTCCGCAGACGTGTTGGACAGGCCTCTGTGGCTATCCACAGCTGGTCACACAGGTGCATGTGATGAAGGCTGTGGGACTGGAGGGCCAGGACTCTGAcagatCATCTGACCCATATGTGATCATCAGTTGTGAAGGGGAGAAGGTGCATTCCCCCGTGCACAAGGACACACTGAGTCCTGAGTTTGATGTGAAGGCACTCTTCTACAGGAAGAAACCCAAAGAGCAGATACGCATTCAGATCTACAACAAAAACGTCCTGTCCGATTCATTCCTGGGCCAGGTGACTCTGAACTCAGATGTTTCAGACCTGCAGAAGGATCACGTACTCCATCTAAAGGGCAAAGGCAGCCGTCAGAACAGTGACCTCCCGGGCATGCTCAGTGTGAGCCTCATCACCAGCAATGTCCTCACCAATATCTGAGAGCAACCAGGTCAGCCAAAATCAAGAGGATCATGAAGATAAACTTCACCTCTGTGTGGATCTGTCAGTTATATGTGAAGCTTTGATAATGTGGAGAGCACTTTTCTTTTGTGGATATAGTTTACATATTGCATACTTCACCAGACTTTTCTAACCACTTTTGTCTGTAGTGGGGCTTTACATGTCTAATAATAATGGCCTTAATGAGTTCTGTTTACATGATCTCTGGGACCAAAATCAGTGTGATATTACATTGTTAATTGATACATTTCCTTCTGATGTATGTGGAATTctactatatgtatatattctcTTAGGTTGGAAAAAGTATGTGAATCTTTTCGTTGCCAATTAATCATCCAAAGTGTTTTCAATCATCCGTATAACAGCCATTAAATATGCTGGACAGTAATTAAGCATGTTTACACAATATTAGCACTCAGCTAACTGCACAATAGCTGAAGGCAGTATTAGCACTGTCTTCTTATATCCGCCTCATCTGAGTGGCCAGTTAGGCCCAGGCTTAATTTTACATTCTGATCAGCTAATTCTGTGGAACACAACCATCAGTAGGGAAATAGTGCCTCAAATGGGTCTGAAATTCACACCTCAGGATTCTAACCACTTTTAAACCAGTACTCTTATTACTATACTTTATAGGTGCCTTTCCACCATAAGAAAGTTTATCAGGAACCTTTTGTGTTTCCACCAAATGAAACACATAATTTTAGGGCGCTTTCACtagtgttagtattagtattattttcgGTCCAAATCTCCAGTACATGTGACCTTTCAGCtccactacagctctgtcctttggctcaggtCATGCCtcttggctcagtttagcagctcataTCTGTACTATAATGCTGCTCGCAATCCCAAAGTACAtagcatgtttggttcactttcTGCAATTGCTTTCTCAATTCAAGTGTAACTGAACCGAGACAACCTTGCTCAGATAATCTCAGACCAGCTGTTTTAGTCCCTTTCTGAGCGTGATTGACACGTCCTCACCTGCACAAACAAACCACACCAAAGtagaaaacacaccagggttcaattcaaacagactaaataTTGCATATGTGAATGCACCTTTAGTGTACTTTTCTGCGGACCGGGAAGCACTAGGGCAGAGCTTGCTGTACTGAACGTCACTGACTGGCCAATGCAGCCTTACATGCCCTTTTtataattctgtttaaaaaacaagCAATGACTACAGCTTGCTTTATATCAATAGCACAACAGCACAACTGTGTCCATaacgtgtttgtttttatataagtGGCGAGTAAGTATACAAgtgtattttgtatgtttggATGGCAAGATTCAAAGATAGCAAAGAAGGAAAGCCGATTTGTGCTGATTAGAATCAAAGCAGCAGTGCTGACACTTGACCAAAATGACCACTTGGTGGCAGTACATCATCACAAAGTCTCAAGGATACTAAAGAgtatttattcctcttgtagAAGCTTCTGTTCTGTTGAGGTCTTTTGTTTAATCTTTTGTTTACTCTGTTGCCTTTAAGTGTAACATTTGATAtgcaatatataatatttcctgctctttaaaaatggatttattttttattttttattttagtattttttttaaacatatctgaAAAATTTCTCTAACAAGTACATTCTCTTTTAATAGACATTACAATGTTGAAACAAACATTTCAACACAGATGTGTGATAATCTGTTCAGGCTAAATTAATGGTACATTATATATTGTAATGAACCTTGCCTGCATGGATAATGATAAAGCTGAGGTGAGTGCATGCTATGAAATGCCTGCCAAAGATGTGCAATGAAGtgccattttgtatttttaatcactAAAGAAGTTTGTCTGTTTCAAATGTTGCGCCTTTATTACTCAGTCTTGCATCACACAAcattgaccaaaaaaaaaaaagctggattGTTGTAATGATCAGATTATAAGGTATAACATGCGTCTTTTACCTGTTTGATACTTGTGTATGTATATCCAGAGTATAAAGTTAAATCGGAAATAAAGTGAACTGGAGTAGTGGA

Function

symbol description
capn5a Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in hatching gland; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).
capn5 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Located in cell surface. Implicated in neovascular inflammatory vitreoretinopathy.

NR:

description
PREDICTED: calpain-5

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K08574 CAPN5; calpain-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913998.2 True 4142 mRNA 0.45 13 23513393 23535680

Neighbor

gene id symbol gene type direction distance location
myo7aa myo7a,myo7aa coding downstream 9096 23455693 ~ 23504297 (-)
aqp11 aqp11 coding downstream 173012 23334177 ~ 23340381 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding downstream 214383 23297355 ~ 23299010 (-)
LOC113526825 LOC108263933 coding downstream 351084 23158732 ~ 23162309 (-)
LOC113526884 NA coding downstream 359744 23150108 ~ 23153649 (-)
dcun1d5 dcun1d5,LOC107712802 coding upstream 11712 23547392 ~ 23557534 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding upstream 23443 23559123 ~ 23571022 (-)
mtif2 mtif2 coding upstream 42359 23578039 ~ 23582080 (-)
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding upstream 79691 23615371 ~ 23632367 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding upstream 98397 23634077 ~ 23678458 (-)
G103817 NA non-coding downstream 65 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 183292 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 189981 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 238111 23270144 ~ 23275282 (-)
G103600 NA non-coding downstream 250310 23262807 ~ 23263083 (-)
G103820 NA non-coding upstream 36909 23572589 ~ 23575679 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 879220 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 998057 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1578297 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1656377 25192057 ~ 25214790 (-)
si LOC108264758,LOC108431149 other downstream 1206624 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2500293 20995341 ~ 21013100 (-)
G102566 NA other downstream 2546483 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3096819 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3533134 19980069 ~ 19980259 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 55265 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 113004 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 197190 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 944622 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1087836 24623516 ~ 24711368 (-)

Expression


Co-expression Network