tbcb (tbcb,LOC107687357,LOC107662130,LOC107560142)


Basic Information

Item Value
gene id tbcb
gene name tbcb,LOC107687357,LOC107662130,LOC107560142
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24436290 ~ 24441614 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914088.2
AGGGAGCAGGGCGCCGTTTGGGCTGCAGCCTGTGAAGTGGGAGGGCAGAAACTTCCAGAAGCGGACTGGGCGGCGTGCAAACTGCCGGAAgctcttttgttttaatgttagctaaatagCTAACCGAAATACTCACAGGATCTAATATACGTGTGTGAATAAATTCAGTGTTGTGcgttttgatttaaaaaaaaaaaaagataaaataatttttggtGTGGACCGAAGTGTGAGAAGGAACACAAGGCTGGAAAAATGGACGAGTGTGTGACAGTGGTCACCAACCCCGTGGTGTCTGTGCGTGTGACCAGCACCCTCAGCTCCTTCGAGGTGAACCGGAGATTTAACCGAGGGATCACCATCgcagagttcaagAGCAAGCTGGAGCTCGTCATCGGCTGCCCTGCGGCCTCTATGGACCTTCAGTTGTTCAGCTCTTCAGACAAGTTCTTGCAGAACCTTGATGATAATGAGGCTCTTTTAGGTTCCTACCCTGTAGATGACGACTGCAGAATACACGTGATTGACCGCAGTGGTTCTCTGACTGGAGCGTTCAGTGATTTGTCCAAGGTGGAGAAATATGAGATTCCTGAAGATGCATATGAGAAGAGAGCagACTCGATGCGAAACTTCAAAAGGAACATGAAGATAGGACGCTTCAACGAAGACAACATGGCTAAACGTGAAGAGGCGCACTcacagaaagaagaagaggagaaagcTGCATTAGCCTTGATCACAGTTGGCAAGCGGTGTCAAGTTCAAGTTGCTGGTCAGCCAACAAAGATTGGTACAGTTATGTTTGTGGGTACAGCAGACTTCAAACCAGGCTACTGGGTGGGTGTGAAATATGATGAGCCACTTGGGAAAAATGATGGCAGTGTGAATGGCAAGCGGTACTTTGAGTGTGAGCCAAAGTACGGTGCATTCGTGAAGCCTCTGTCCGTGACTGTGGGAGACTTTCCAGAGGAGGACTACGGTCTGGATGAGATGTAGGCTCCACCTGGCATGGTATCACAAGGTATCAGGCGGGGGAAAAACATCTGGAAGGACAAAGCAGGACTCGAGTCAGTCCACTGTCATAGCCCTTGATTACAAGGGTTTTTCCTGTTGTTATAGCTAATCATATTTTAGTTTCATGCTTGTATTGAAGAAACCTAAAAGGTGGCCTTTACACAACACTGTTAGTGGACATTTAACAGCATCTGCTTGCaattaaacaataacatttttaattacatctCTGTGGCCACTGGCATTGCTTAGCTCATAATGTGAGGACAGGAGTAGACGCCAAATTAGCTGTCTCGCATATCAGCTGAGACAGAATTAAcagatttttggttttttgcCAAGCATTTTGCTGCGTTTTGATTGcgaatatttcacattttgttttctcaccgaacttcagtgtgtttttctccatctcttcatAGCTGCTTTTAATGAATGATAAAATGTGTAAGAAGAGATAGCATAACATAATTATTTGGGATGTTGaacttttattttcactaatatgtataatatgtataaatgtttttggaAACTAA
>XM_026914089.2
TCAGGGAGCAGGGCGCCGTTTGGGCTGCAGCCTGTGAAGTGGGAGGGCAGAAACTTCCAGAAGCGGACTGGGCGGCGTGCAAACTGCCGGAAgctcttttgttttaatgttagctaaatagCTAACCGAAATACTCACAGGATCTAATATACGTGTGTGAATAAATTCAGTGTTGTGcgttttgatttaaaaaaaaaaaaagataaaataatttttggtGTGGACCGAAGTGTGAGTGGCTCCTCATCAGACCTGCATAGGGTGTAGTAACAAGGAACACAAGGCTGGAAAAATGGACGAGTGTGTGACAGTGGTCACCAACCCCGTGGTGTCTGTGCGTGTGACCAGCACCCTCAGCTCCTTCGAGGTGAACCGGAGATTTAACCGAGGGATCACCATCgcagagttcaagAGCAAGCTGGAGCTCGTCATCGGCTGCCCTGCGGCCTCTATGGACCTTCAGTTGTTCAGCTCTTCAGACAAGTTCTTGCAGAACCTTGATGATAATGAGGCTCTTTTAGGTTCCTACCCTGTAGATGACGACTGCAGAATACACGTGATTGACCGCAGTGGTTCTCTGACTGGAGCGTTCAGTGATTTGTCCAAGGTGGAGAAATATGAGATTCCTGAAGATGCATATGAGAAGAGAGCagACTCGATGCGAAACTTCAAAAGGAACATGAAGATAGGACGCTTCAACGAAGACAACATGGCTAAACGTGAAGAGGCGCACTcacagaaagaagaagaggagaaagcTGCATTAGCCTTGATCACAGTTGGCAAGCGGTGTCAAGTTCAAGTTGCTGGTCAGCCAACAAAGATTGGTACAGTTATGTTTGTGGGTACAGCAGACTTCAAACCAGGCTACTGGGTGGGTGTGAAATATGATGAGCCACTTGGGAAAAATGATGGCAGTGTGAATGGCAAGCGGTACTTTGAGTGTGAGCCAAAGTACGGTGCATTCGTGAAGCCTCTGTCCGTGACTGTGGGAGACTTTCCAGAGGAGGACTACGGTCTGGATGAGATGTAGGCTCCACCTGGCATGGTATCACAAGGTATCAGGCGGGGGAAAAACATCTGGAAGGACAAAGCAGGACTCGAGTCAGTCCACTGTCATAGCCCTTGATTACAAGGGTTTTTCCTGTTGTTATAGCTAATCATATTTTAGTTTCATGCTTGTATTGAAGAAACCTAAAAGGTGGCCTTTACACAACACTGTTAGTGGACATTTAACAGCATCTGCTTGCaattaaacaataacatttttaattacatctCTGTGGCCACTGGCATTGCTTAGCTCATAATGTGAGGACAGGAGTAGACGCCAAATTAGCTGTCTCGCATATCAGCTGAGACAGAATTAAcagatttttggttttttgcCAAGCATTTTGCTGCGTTTTGATTGcgaatatttcacattttgttttctcaccgaacttcagtgtgtttttctccatctcttcatAGCTGCTTTTAATGAATGATAAAATGTGTAAGAAGAGATAGCATAACATAATTATTTGGGATGTTGaacttttattttcactaatatgtataatatgtataaatgtttttggaAACTAA
>XM_034305055.1
CACTTGCTCAGGGAGCAGGGCGCCGTTTGGGCTGCAGCCTGTGAAGTGGGAGGGCAGAAACTTCCAGAAGCGGACTGGGCGGCGTGCAAACTGCCGGAAgctcttttgttttaatgttagctaaatagCTAACCGAAATACTCACAGGATCTAATATACGTGTGTGAATAAATTCAGTGTTGTGcgttttgatttaaaaaaaaaaaaagataaaataatttttggtGTGGACCGAAGTGTGAGAAGGAACACAAGGCTGGAAAAATGGACGAGTGTGTGACAGTGGTCACCAACCCCGTGGTGTCTGTGCGTGTGACCAGCACCCTCAGCTCCTTCGAGGTGAACCGGAGATTTAACCGAGGGATCACCATCgcagagttcaagAGCAAGCTGGAGCTCGTCATCGGCTGCCCTGCGGCCTCTATGGACCTTCAGTTGTTCAGCTCTTCAGACAAGTTCTTGCAGAACCTTGATGATAATGAGGCTCTTTTAGGTTCCTACCCTGTAGATGACGACTGCAGAATACACGTGATTGACCGCAGTGGTTCTCTGACTGGAGCGTTCAGTGATTTGTCCAAGGTGGAGAAATATGAGATTCCTGAAGATGCATATGAGAAGAGAGCagACTCGATGCGAAACTTCAAAAGGAACATGAAGATAGGACGCTTCAACGAAGACAACATGGCTAAACGTGAAGAGGCGCACTcacagaaagaagaagaggagaaagcTGCATTAGCCTTGATCACAGTTGGCAAGCGGTGTCAAGTTCAAGTTGCTGGTCAGCCAACAAAGATTGGTACAGCAGACTTCAAACCAGGCTACTGGGTGGGTGTGAAATATGATGAGCCACTTGGGAAAAATGATGGCAGTGTGAATGGCAAGCGGTACTTTGAGTGTGAGCCAAAGTACGGTGCATTCGTGAAGCCTCTGTCCGTGACTGTGGGAGACTTTCCAGAGGAGGACTACGGTCTGGATGAGATGTAGGCTCCACCTGGCATGGTATCACAAGGTATCAGGCGGGGGAAAAACATCTGGAAGGACAAAGCAGGACTCGAGTCAGTCCACTGTCATAGCCCTTGATTACAAGGGTTTTTCCTGTTGTTATAGCTAATCATATTTTAGTTTCATGCTTGTATTGAAGAAACCTAAAAGGTGGCCTTTACACAACACTGTTAGTGGACATTTAACAGCATCTGCTTGCaattaaacaataacatttttaattacatctCTGTGGCCACTGGCATTGCTTAGCTCATAATGTGAGGACAGGAGTAGACGCCAAATTAGCTGTCTCGCATATCAGCTGAGACAGAATTAAcagatttttggttttttgcCAAGCATTTTGCTGCGTTTTGATTGcgaatatttcacattttgttttctcaccgaacttcagtgtgtttttctccatctcttcatAGCTGCTTTTAATGAATGATAAAATGTGTAAGAAGAGATAGCATAACATAATTATTTGGGATGTTGaacttttattttcactaatatgtataatatgtataaatgtttttggaAACTAA

Function

symbol description
tbcb Orthologous to human TBCB (tubulin folding cofactor B).

NR:

description
tubulin-folding cofactor B

GO: NA

KEGG:

id description
K17262 TBCB, CKAP1, ALF1; tubulin-specific chaperone B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914088.2 False 1556 mRNA 0.44 7 24436290 24441605
XM_026914089.2 True 1593 mRNA 0.44 8 24436290 24441607
XM_034305055.1 False 1547 mRNA 0.44 7 24436290 24441614

Neighbor

gene id symbol gene type direction distance location
tmem123 NA coding downstream 3023 24427587 ~ 24433267 (-)
arfgap2 arfgap2 coding downstream 69031 24349599 ~ 24367259 (-)
large2 large2,gyltl1b,LOC107670096,LOC107554994,LOC107602128,LOC107670633 coding downstream 166695 24135378 ~ 24269595 (-)
cngb1a LOC108264061,LOC107717637 coding downstream 462102 23932898 ~ 23974188 (-)
kifc3 kifc3 coding downstream 509353 23877707 ~ 23926937 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding upstream 28353 24469967 ~ 24477972 (-)
c6h19orf47 c4h19orf47 coding upstream 225447 24667061 ~ 24674856 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding upstream 239153 24680767 ~ 24686250 (-)
capn12 LOC108264620,LOC108433431 coding upstream 263390 24705004 ~ 24727022 (-)
znf296 LOC108264426 coding upstream 297477 24739091 ~ 24750597 (-)
G103820 NA non-coding downstream 860611 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 922962 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1106189 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 1112878 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 1161008 23270144 ~ 23275282 (-)
G104320 NA non-coding upstream 92123 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 672363 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 750443 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 797496 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 801858 25243472 ~ 25245244 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 697511 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 736583 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 825842 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 2129521 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 3423190 20995341 ~ 21013100 (-)
sipa1l3 sipa1l3 other upstream 38688 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 181902 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 190025 24631639 ~ 24661978 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 310039 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 602172 25043786 ~ 25079512 (-)

Expression


Co-expression Network