cd9a (cd9)


Basic Information

Item Value
gene id cd9a
gene name cd9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30614083 ~ 30625333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914118.2
GGACGTAGGGAAACAAAGGAGCGGATCCGTGAGGCTCTCGGTGACCTGAAGCCAGAGCTTCATAGCATTTGCAGCAGAATTAGTTCTCACGCGCGCAGACGGAGTGGCGGAGTCGCTCGCTGTGTGGCGCTCGCGCAGCTTGTGCGTGAAGTCGGAGCGAAACGGGAGCGCGTGATCCGCGTTCTCCTAAAAACACGCTGACTAAAAAACATCTACATTTTcattgagaaagagaaagatagacagagtgtgtgtgagagtgtgtgtagggagTGATGGCGGCTCTGACCGGAGGAGAGATGTGCATCAAGTACTTAATGTTCGCCTTCAATTTCGTGTTCTGGctggcAGGTACAGGTGTGTTGGCGGTGGGTCTCTGGCTCAGGTTTGATCCCAGGACTAAAAGCCTGTTTGAAGGTGATGGCTCTCCGAGTGGCTTCTACACAGtggtgtgtatCCTCATAGCCATAGGAGGATTGATGATGCTGGTGGGGTTTCTCGGCTGCTGCGGTGCCATTCAGGAGTCGCTGTGCATGCTGGGATTGtttttcttcttcctcctgctTATCTTTGTTGTGGAAGTGGCCGTTGGGATTTGGGGATTTTCCATCCAGAGTAAGgttgttgatgatgtcactcagTTCTACAAGGAAACCTACGAAAAATACAAAGAGAATAAACAGGAAGCTCTGAGAGAGACCCTGCACCTGATCCAGTACGGGCTGAACTGCTGTGGACCCTTCAGCTCCGAGGACATGGAGACTCTCGAGGAGACGTGTCCTAAACGTGAGGGACTGGATGTGCTCATCACCAAGagcTGCCCTGACGCTATTGAGAAATTCTTCACCTCTAAACTCCATATTATCGGCGGCATTGGGATCGGAATCGGAGTGATCATGatCTTGGGCATGATCTTCAGCATGATGCTGCTGTGTGCCATCAGGAAGAGTCAGGAGATCGTCTGAGGGCGTTTATGCGAAACGCCGCCGTATTCGTGTTGCATGATTTCCATCCCGAAGCTCTCGCTGTCACCACCAGCTCTGCGCAGCTCGTCCTCTGATTGGTGGGAATTTCACAGGCCTCACAGTTTAGCTCTATGATTGGTTCATAtcatgaaacatgaaactgTAGATTTAGTTGATTTTGTGGAGCTCGTTGGAAAaactttgtatattttttattgttcatgTCAGAATAGACGATgacgttgttgttgtttgcacTGTGTCACTGCTGATGttgtgttgatgtaaacacataTATGacctttttaaacattataGTCATGTctgagttttttaaaaattattatcaCCATTATTTATGTTAcccaaattattttaatgctcTGGGTTAGGAATCATGATGCTCCAAAGATACAGTCccttccagaattattggcacccttcaaaaaATTGGGAatgattataaaattattaatataatataaaataaacagaataattcAAAAAGTTCTGATTAAACTTTAGGATCAAAATTGTTCTCATAAGAAGGTCTTcttttgaataattaaataacagtattttctctcaaacaCATGGGCACCATCAGAGGAATATTTCAAAtgaatgcaaacaaatttgacACTAAAACAAAGTctgaaaagtgaaaatgtatttttattgttttcagtgTCTACGAACTCTCTCACTGTCCAGTTCTTGTTTCCATGGGGTATAAGTttgaggttgcacacatgtaaaatccccTTATTATCCATCCAAAGAGCTCCAGAGCAAAAAAGACTGGGTTGTCTCTACCATGAGGTTACAGTTTGGTCATAGATAGATCTTTCAACAAGACACTGACCTTAAACGTACATCTAAATCaactaaatgaatgaaagagttttttACGCCGACCGTCacagtctctggatttgaacctCGCTGAAACCGTGTGATGTGAATCAAACAGAATGTTCAGAATGTAAAAGAGATTAAAATGTGCATGGAGGAATGGCTGAGACCTTCTGCACATACACTGCCTCTGACCTCATTACAGGACGAGACTCTGTGCTGTTACTCTCTCCCTAGAGGACTGGGCTTGGAAtatgaaatgaattattaattgtgggggggtgccaataattttgaaaagtGTTTTGCAAGAAACTTGTGCACATTGTGGTTGAAAAATagtgtgttaaataaaaaagtatacaGCGTCCCTGTGTGTATAAACTACCGATTGTTGcatatgatttaatttttttttcatgaaggGGGCCAGTAACTTTTGAGAGCACTGTAGGTCAAAaggttttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagatcgtgATCAGGACCTCAGTCAGCAGGTCAGTAATGAGGAATCTACAGGAAACTCTAATGAACTAAACTTCATCACATTTAATCATGACGTTAATCACGACGATGACTCACACTTTCATCTGAAGTTTCCGGATTCtcccttttccttctttctgcaAAACTTTGAAATGGTTCAAATGCCTAGTAGATTATTGcaagatttatatatttttatttcaggtaCATTAAATAGCTCTGAGTTGAATCTAAATGAGGATGAGCATTAATAACAATGtctaaaataatgtaataattaatgattgtatgttgaattattaaattaaattataataattgtgtGTTAAATTGAACGTTATTAGCTGGTAAGAATTTTATTTCGACCAACAACCACATCATTTTTCTTGAAATAAACAGGATGTGAAATTTCCCTGgagcttttattaaataattattccgtttattaaattaaattaatggtCATCTGTTAAATATAAAGTGAAATCCTACAAGCAGGCTTTTGCTATGTGTTTACACTGAGCTTATAAAATGCACTCGTGGAGGAAAATATTGCATATTTCCTCATATATTTATCTTTCTTATTACTTTTGTTGTAATATGATTTCatgtgaataactgaataaataatatgtacacaataa
>XM_026914119.2
tatgtgtattatatttgtgatgtacagtgtgtgtagagctgtAAGGgctctacagtgtgtgtaagcTCTGTGTACTGTAGTCTGTTATATGCGGGTTGAAGAATGAGAAATCTCgcttcagccaatcacatgccaGTTCTAATCTCTgcttcattaatattcatgagctcTCCTCGCTTCCTCGACTGGAAGGTTTTTGGCTGAGGTGAGAACAAATCAACTTCCTGCAGCTTTTGTTTTGGGATTTTTCCCCAGAGACGACAAGGACGAGGCGATGTAGCGGATATTTTAGCGTTTGCTCTGAACTTTTAGAAAGATAAAAACTTTGTAGTGAAttatatttcagctttaatctcTAATTCAGCTGGAAGTGAGAGGAGACCTGGACCTGTTCATGCACAATGAGCTGCTGTCCTGTACCGAGTATGAAATACCTGCTGCTTATCTTCAACCTTCTCTactggctggcAGGTACAGGTGTGTTGGCGGTGGGTCTCTGGCTCAGGTTTGATCCCAGGACTAAAAGCCTGTTTGAAGGTGATGGCTCTCCGAGTGGCTTCTACACAGtggtgtgtatCCTCATAGCCATAGGAGGATTGATGATGCTGGTGGGGTTTCTCGGCTGCTGCGGTGCCATTCAGGAGTCGCTGTGCATGCTGGGATTGtttttcttcttcctcctgctTATCTTTGTTGTGGAAGTGGCCGTTGGGATTTGGGGATTTTCCATCCAGAGTAAGgttgttgatgatgtcactcagTTCTACAAGGAAACCTACGAAAAATACAAAGAGAATAAACAGGAAGCTCTGAGAGAGACCCTGCACCTGATCCAGTACGGGCTGAACTGCTGTGGACCCTTCAGCTCCGAGGACATGGAGACTCTCGAGGAGACGTGTCCTAAACGTGAGGGACTGGATGTGCTCATCACCAAGagcTGCCCTGACGCTATTGAGAAATTCTTCACCTCTAAACTCCATATTATCGGCGGCATTGGGATCGGAATCGGAGTGATCATGatCTTGGGCATGATCTTCAGCATGATGCTGCTGTGTGCCATCAGGAAGAGTCAGGAGATCGTCTGAGGGCGTTTATGCGAAACGCCGCCGTATTCGTGTTGCATGATTTCCATCCCGAAGCTCTCGCTGTCACCACCAGCTCTGCGCAGCTCGTCCTCTGATTGGTGGGAATTTCACAGGCCTCACAGTTTAGCTCTATGATTGGTTCATAtcatgaaacatgaaactgTAGATTTAGTTGATTTTGTGGAGCTCGTTGGAAAaactttgtatattttttattgttcatgTCAGAATAGACGATgacgttgttgttgtttgcacTGTGTCACTGCTGATGttgtgttgatgtaaacacataTATGacctttttaaacattataGTCATGTctgagttttttaaaaattattatcaCCATTATTTATGTTAcccaaattattttaatgctcTGGGTTAGGAATCATGATGCTCCAAAGATACAGTCccttccagaattattggcacccttcaaaaaATTGGGAatgattataaaattattaatataatataaaataaacagaataattcAAAAAGTTCTGATTAAACTTTAGGATCAAAATTGTTCTCATAAGAAGGTCTTcttttgaataattaaataacagtattttctctcaaacaCATGGGCACCATCAGAGGAATATTTCAAAtgaatgcaaacaaatttgacACTAAAACAAAGTctgaaaagtgaaaatgtatttttattgttttcagtgTCTACGAACTCTCTCACTGTCCAGTTCTTGTTTCCATGGGGTATAAGTttgaggttgcacacatgtaaaatccccTTATTATCCATCCAAAGAGCTCCAGAGCAAAAAAGACTGGGTTGTCTCTACCATGAGGTTACAGTTTGGTCATAGATAGATCTTTCAACAAGACACTGACCTTAAACGTACATCTAAATCaactaaatgaatgaaagagttttttACGCCGACCGTCacagtctctggatttgaacctCGCTGAAACCGTGTGATGTGAATCAAACAGAATGTTCAGAATGTAAAAGAGATTAAAATGTGCATGGAGGAATGGCTGAGACCTTCTGCACATACACTGCCTCTGACCTCATTACAGGACGAGACTCTGTGCTGTTACTCTCTCCCTAGAGGACTGGGCTTGGAAtatgaaatgaattattaattgtgggggggtgccaataattttgaaaagtGTTTTGCAAGAAACTTGTGCACATTGTGGTTGAAAAATagtgtgttaaataaaaaagtatacaGCGTCCCTGTGTGTATAAACTACCGATTGTTGcatatgatttaatttttttttcatgaaggGGGCCAGTAACTTTTGAGAGCACTGTAGGTCAAAaggttttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagatcgtgATCAGGACCTCAGTCAGCAGGTCAGTAATGAGGAATCTACAGGAAACTCTAATGAACTAAACTTCATCACATTTAATCATGACGTTAATCACGACGATGACTCACACTTTCATCTGAAGTTTCCGGATTCtcccttttccttctttctgcaAAACTTTGAAATGGTTCAAATGCCTAGTAGATTATTGcaagatttatatatttttatttcaggtaCATTAAATAGCTCTGAGTTGAATCTAAATGAGGATGAGCATTAATAACAATGtctaaaataatgtaataattaatgattgtatgttgaattattaaattaaattataataattgtgtGTTAAATTGAACGTTATTAGCTGGTAAGAATTTTATTTCGACCAACAACCACATCATTTTTCTTGAAATAAACAGGATGTGAAATTTCCCTGgagcttttattaaataattattccgtttattaaattaaattaatggtCATCTGTTAAATATAAAGTGAAATCCTACAAGCAGGCTTTTGCTATGTGTTTACACTGAGCTTATAAAATGCACTCGTGGAGGAAAATATTGCATATTTCCTCATATATTTATCTTTCTTATTACTTTTGTTGTAATATGATTTCatgtgaataactgaataaataatatgtacacaataa
>XM_026914120.2
TCCTCGACTGGAAGGTTTTTGGCTGAGCTGGAAGTGAGAGGAGACCTGGACCTGTTCATGCACAATGAGCTGCTGTCCTGTACCGAGTATGAAATACCTGCTGCTTATCTTCAACCTTCTCTactggctggcAGGTACAGGTGTGTTGGCGGTGGGTCTCTGGCTCAGGTTTGATCCCAGGACTAAAAGCCTGTTTGAAGGTGATGGCTCTCCGAGTGGCTTCTACACAGtggtgtgtatCCTCATAGCCATAGGAGGATTGATGATGCTGGTGGGGTTTCTCGGCTGCTGCGGTGCCATTCAGGAGTCGCTGTGCATGCTGGGATTGtttttcttcttcctcctgctTATCTTTGTTGTGGAAGTGGCCGTTGGGATTTGGGGATTTTCCATCCAGAGTAAGgttgttgatgatgtcactcagTTCTACAAGGAAACCTACGAAAAATACAAAGAGAATAAACAGGAAGCTCTGAGAGAGACCCTGCACCTGATCCAGTACGGGCTGAACTGCTGTGGACCCTTCAGCTCCGAGGACATGGAGACTCTCGAGGAGACGTGTCCTAAACGTGAGGGACTGGATGTGCTCATCACCAAGagcTGCCCTGACGCTATTGAGAAATTCTTCACCTCTAAACTCCATATTATCGGCGGCATTGGGATCGGAATCGGAGTGATCATGatCTTGGGCATGATCTTCAGCATGATGCTGCTGTGTGCCATCAGGAAGAGTCAGGAGATCGTCTGAGGGCGTTTATGCGAAACGCCGCCGTATTCGTGTTGCATGATTTCCATCCCGAAGCTCTCGCTGTCACCACCAGCTCTGCGCAGCTCGTCCTCTGATTGGTGGGAATTTCACAGGCCTCACAGTTTAGCTCTATGATTGGTTCATAtcatgaaacatgaaactgTAGATTTAGTTGATTTTGTGGAGCTCGTTGGAAAaactttgtatattttttattgttcatgTCAGAATAGACGATgacgttgttgttgtttgcacTGTGTCACTGCTGATGttgtgttgatgtaaacacataTATGacctttttaaacattataGTCATGTctgagttttttaaaaattattatcaCCATTATTTATGTTAcccaaattattttaatgctcTGGGTTAGGAATCATGATGCTCCAAAGATACAGTCccttccagaattattggcacccttcaaaaaATTGGGAatgattataaaattattaatataatataaaataaacagaataattcAAAAAGTTCTGATTAAACTTTAGGATCAAAATTGTTCTCATAAGAAGGTCTTcttttgaataattaaataacagtattttctctcaaacaCATGGGCACCATCAGAGGAATATTTCAAAtgaatgcaaacaaatttgacACTAAAACAAAGTctgaaaagtgaaaatgtatttttattgttttcagtgTCTACGAACTCTCTCACTGTCCAGTTCTTGTTTCCATGGGGTATAAGTttgaggttgcacacatgtaaaatccccTTATTATCCATCCAAAGAGCTCCAGAGCAAAAAAGACTGGGTTGTCTCTACCATGAGGTTACAGTTTGGTCATAGATAGATCTTTCAACAAGACACTGACCTTAAACGTACATCTAAATCaactaaatgaatgaaagagttttttACGCCGACCGTCacagtctctggatttgaacctCGCTGAAACCGTGTGATGTGAATCAAACAGAATGTTCAGAATGTAAAAGAGATTAAAATGTGCATGGAGGAATGGCTGAGACCTTCTGCACATACACTGCCTCTGACCTCATTACAGGACGAGACTCTGTGCTGTTACTCTCTCCCTAGAGGACTGGGCTTGGAAtatgaaatgaattattaattgtgggggggtgccaataattttgaaaagtGTTTTGCAAGAAACTTGTGCACATTGTGGTTGAAAAATagtgtgttaaataaaaaagtatacaGCGTCCCTGTGTGTATAAACTACCGATTGTTGcatatgatttaatttttttttcatgaaggGGGCCAGTAACTTTTGAGAGCACTGTAGGTCAAAaggttttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagatcgtgATCAGGACCTCAGTCAGCAGGTCAGTAATGAGGAATCTACAGGAAACTCTAATGAACTAAACTTCATCACATTTAATCATGACGTTAATCACGACGATGACTCACACTTTCATCTGAAGTTTCCGGATTCtcccttttccttctttctgcaAAACTTTGAAATGGTTCAAATGCCTAGTAGATTATTGcaagatttatatatttttatttcaggtaCATTAAATAGCTCTGAGTTGAATCTAAATGAGGATGAGCATTAATAACAATGtctaaaataatgtaataattaatgattgtatgttgaattattaaattaaattataataattgtgtGTTAAATTGAACGTTATTAGCTGGTAAGAATTTTATTTCGACCAACAACCACATCATTTTTCTTGAAATAAACAGGATGTGAAATTTCCCTGgagcttttattaaataattattccgtttattaaattaaattaatggtCATCTGTTAAATATAAAGTGAAATCCTACAAGCAGGCTTTTGCTATGTGTTTACACTGAGCTTATAAAATGCACTCGTGGAGGAAAATATTGCATATTTCCTCATATATTTATCTTTCTTATTACTTTTGTTGTAATATGATTTCatgtgaataactgaataaataatatgtacacaataa

Function

symbol description
cd9 Enables integrin binding activity. Involved in several processes, including fusion of sperm to egg plasma membrane involved in single fertilization; glial cell migration; and negative regulation of platelet aggregation. Located in extracellular exosome. Part of protein-containing complex. Implicated in prostate adenocarcinoma. Biomarker of breast carcinoma; female reproductive organ cancer (multiple); severe acute respiratory syndrome; transitional cell carcinoma; and urinary bladder cancer.

NR:

description
CD9 antigen-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914118.2 False 3012 mRNA 0.40 8 30614083 30625333
XM_026914119.2 True 3132 mRNA 0.39 8 30614083 30623187
XM_026914120.2 False 2795 mRNA 0.39 9 30614083 30623009

Neighbor

gene id symbol gene type direction distance location
si:dkey-88e18.8 LOC108264158 coding downstream 4876 30604089 ~ 30609207 (-)
cfap161 cfap161 coding downstream 16339 30592721 ~ 30597744 (-)
utp15 utp15,LOC107559694,LOC107600050,LOC107735583 coding downstream 39408 30565402 ~ 30574675 (-)
calub calu,calub,LOC107600067,LOC105939814,LOC107735596,LOC107090546,LOC107662890 coding downstream 51237 30557595 ~ 30562846 (-)
kcp NA coding downstream 63798 30516353 ~ 30550285 (-)
caps2 caps2 coding upstream 75107 30700440 ~ 30710723 (-)
si:dkey-30c15.10 LOC108264154 coding upstream 115134 30740467 ~ 30755090 (-)
pdp2 pdp2,LOC108423909 coding upstream 131116 30756449 ~ 30760179 (-)
si:dkey-30c15.2 LOC108264169 coding upstream 167607 30792940 ~ 30804496 (-)
LOC113524884 LOC108264165 coding upstream 225071 30850404 ~ 30857147 (-)
G107550 NA non-coding downstream 144180 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 190745 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 207119 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 222625 30363627 ~ 30391458 (-)
LOC113526678 NA non-coding upstream 88785 30714118 ~ 30715453 (-)
G107800 NA non-coding upstream 185714 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 195376 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 202818 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 210301 30835634 ~ 30884613 (-)
G107525 NA other downstream 269207 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 900082 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3453984 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4005744 26569085 ~ 26608339 (-)
G105376 NA other downstream 4373078 26239330 ~ 26241005 (-)
bbs10 bbs10 other upstream 102711 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 160260 30785593 ~ 30849697 (-)
G107803 NA other upstream 191246 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 293851 30919184 ~ 30989204 (-)

Expression


Co-expression Network