LOC113526781 (LOC108264218)


Basic Information

Item Value
gene id LOC113526781
gene name LOC108264218
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27311961 ~ 27314800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914124.2
GGCTGCACGGTGAGAGCAGGTTTCAGGATGGGATTTTAGAACCACACACTGTAAAGAATAAACATGGGACAAACTCAGCACATTGAGAAAACCGAACACGCAGAGATTGACGTCAttacacttcaggacatgtaTAAAAAGTTTGTGACTGAGTGCCCAAGCGgccttttgtttttgcatgaaTTTAAGAAGTTTTTCGGAGTGGGACCCTCTGGGGAAGCATCCGAGTACGCAGAGAATATGTTTCGCGCCTTTGACAAGAATGGGGACAACACTATTGACTTCTTGGAGTTTGTGGCTGCTCTGAATTTGGTGTTCAGGGGAGATTTAGAGCACAAGCTGAGATGGTCATTCAAAGTGTACGACAAGGATGGCAACGGTTTTATAGACAAAGCTGAACTCAGAGCGATTGTTGAAATTATATATCGTGTCAGGAAAGTAGGCAGGAAAGGTCCAGATGTGTCCCTTGATGAAATCTGTGAAAGAATCTTCAAAGTGGTAGATGTGAATAGAGATGgtCAGATTACACTGGAGGAGTTTTTAGCAGGGGCTCAGAAAGATCCATGGATTCTTAACATGTTGCGTTTAGACATGAACCCGTATAGTTGGGTGGCGGAACAGAGGAGGAAAAGTGCtcatttctgagatgaaaatgTCTCTACAGGAAATCCTGAATATTCCGACATCAGTTGTATTGTACTAGATTCATTTTTCCCCACAGATACTATATGTTTGAtaacaaaattgtttttaatggaTTGTCTTAATCAAGCACTTACTATATATTCAG

Function

NR:

description
PREDICTED: guanylyl cyclase-activating protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914124.2 True 790 mRNA 0.41 4 27311961 27314800

Neighbor

gene id symbol gene type direction distance location
LOC113526860 LOC108443293,LOC108264217 coding downstream 8231 27298985 ~ 27303730 (-)
LOC113526686 LOC108264731,LOC108432714 coding downstream 14790 27203767 ~ 27297171 (-)
LOC113526349 lgals4,LOC108442553 coding downstream 109906 27193919 ~ 27202055 (-)
LOC113526685 LOC108264058,LOC108263899 coding downstream 125924 27175267 ~ 27186037 (-)
LOC117597534 NA coding downstream 168366 27138247 ~ 27143595 (-)
LOC113526458 chst1,LOC108432931 coding upstream 62037 27376837 ~ 27379548 (-)
fkbp4 fkbp4,LOC107686573,LOC107705800 coding upstream 200880 27515680 ~ 27524516 (-)
wash1 wash1,LOC103045331,LOC107686618,LOC107564895 coding upstream 231697 27546497 ~ 27557970 (-)
ptprq ptprq,LOC108413201,LOC107705767 coding upstream 287426 27602226 ~ 27658837 (-)
otogl otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding upstream 347608 27662408 ~ 27708771 (-)
LOC113526487 LOC108264058 non-coding downstream 123169 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 167087 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 182789 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 204390 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 436127 26875595 ~ 26875834 (-)
G106193 NA non-coding upstream 464332 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 547040 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 630016 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 638718 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 639464 27954264 ~ 27954479 (-)
si:dkey-151j17.4 NA other downstream 151862 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 703622 26569085 ~ 26608339 (-)
G105376 NA other downstream 1070956 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1763033 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2232449 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 2305999 29620799 ~ 29714001 (-)
G107525 NA other upstream 3028731 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3413244 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3470793 30785593 ~ 30849697 (-)
G107803 NA other upstream 3501779 30816579 ~ 30820422 (-)

Expression


Co-expression Network