cfap161 (cfap161)


Basic Information

Item Value
gene id cfap161
gene name cfap161
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30592721 ~ 30597744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914144.2
tgagtTCGGTGTGAGTGGAGTGTGAGTTGAGTGTGagttgagtgtgagtgtgagtgcagtgtgagtgtgtcagcGCTGAGATGTCGCATGTGCGGGTTTACAGGCCGGGGGTCCGGATGGGGAACTGGAGAGAGGACGAGGCTCTGGAGGAGgaggcTCTGAGAGACTTCCTGCAGCGGAAGGACAGAGGAGAGCTCACTGTCCAAAAAACCGGCGTCCTGAGACAAACCCTCCTCCACCCTGTGAATCTCTCCGTGTCCCCGGATGGACTGTTGCGTTTCGGAGACACGGTCATGCTGTTAAACACTAGAGGGAAGACGCACGACCCGTGTGACCCCTGCGCCCTCAGCATCATCGCCGACCTCAGCAACATCACATCACGTCCAGAAACAAACTCCAAGCCGCATCTACAGGGTCCCTGTCAGGTGGGCGGAGCCAGCAGCATCCAGCCGTGTGTGATGAACGCCTTCATAATCACCAGTGTGGACGAGACTGCAGATGGAGAGATACTCAGATACGAGCAAAACTTCGCCCTCAGGACAACTGCAGGCTTCGGTGGAGAGCTTTACCTGGCCAGTGACCACAGAACCTTCCAGAAGTGTGCTAAGAAATCCCGGCTACAGGAAGTGAGCTTAGTGGAGCAGCTGGACTTCCTGTGTTGGTGGAGGCTTGTTTATTTTGATCCACAGGACCGACTCGAACACGAAGGCTTCCCCGTGCGGgtgaacTCTAAGCTGCTGCTGTCTCACTGTAAAACTAACCAGTGTCTCGCTGCTCTGCCTGATCACACACTCCGGACTACGTTTGGGAAAATGTCCGAGATCACGGCTCACACGTTCCTGGACTCCCATAAGGCCGAGCAGGAACGTAATCACTGGATGTTCGTGACGGCTGATCCGGGAGAACAGGAACCGAGCGCACTGCGACGTCACCTTGAGTCCAGCGTCACCGACCACAACcagtcagaaacacacacacacacaggctgaaaactgaaaacactcACAGACGAGTGTaacagctgctgctgcttctgctgcgtcctgaaattaaataatgattataCTCCAGATATTTCTCAGTGTTTTAACTAAAAGACCTCGTAGTGTATTAAAGTGTCATCACTGCAGATAACGACATCTTAGCCAGTgacaatatcttgaatatgggcaaatttatcttatatttctgattatgaaatgattataaatcaaatgtaaGCTTAATCAGCTTGTTTGTagatgcttttactcatttcaagctttaaatgttcttattctATAGACagatcatttttcttctttgcagaaataaatgtttaaaattaacaaaattatctgccaataaaacaagactacttcaagcttgaaattagtaaaaaaaatgtctaggaataggtttaataatcttatatttgattcattttaatcTTGTAACAGGAAGCCCGGACTGCTCctgatgttttactgtttttttttcaggatttgtGCTCGAACTTTAATCAGACGTTTCAGCTTAATGTGAttgatttaatgaaataaaagcagccattttgattcaGTTACCTGCACAGACATAAAGTTTCACAGTGtctcttttacatttataattgtgCATTTAGAGCATTTAGCAGAATATTATCCGA

Function

symbol description
cfap161 Acts upstream of or within cilium assembly. Located in motile cilium. Is expressed in Kupffer's vesicle; nervous system; otic vesicle; and pronephric duct. Orthologous to human CFAP161 (cilia and flagella associated protein 161).

NR:

description
PREDICTED: uncharacterized protein C15orf26 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914144.2 True 1645 mRNA 0.46 7 30592721 30597744

Neighbor

gene id symbol gene type direction distance location
utp15 utp15,LOC107559694,LOC107600050,LOC107735583 coding downstream 18046 30565402 ~ 30574675 (-)
calub calu,calub,LOC107600067,LOC105939814,LOC107735596,LOC107090546,LOC107662890 coding downstream 29875 30557595 ~ 30562846 (-)
kcp NA coding downstream 42436 30516353 ~ 30550285 (-)
LOC117597520 LOC108264051 coding downstream 78357 30499865 ~ 30514364 (-)
ppp6r2b ppp6r2 coding downstream 102808 30469960 ~ 30489913 (-)
si:dkey-88e18.8 LOC108264158 coding upstream 6345 30604089 ~ 30609207 (-)
cd9a cd9 coding upstream 16339 30614083 ~ 30625333 (-)
caps2 caps2 coding upstream 102696 30700440 ~ 30710723 (-)
si:dkey-30c15.10 LOC108264154 coding upstream 142723 30740467 ~ 30755090 (-)
pdp2 pdp2,LOC108423909 coding upstream 158705 30756449 ~ 30760179 (-)
G107550 NA non-coding downstream 122818 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 169383 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 185757 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 201263 30363627 ~ 30391458 (-)
LOC113526678 NA non-coding upstream 116374 30714118 ~ 30715453 (-)
G107800 NA non-coding upstream 213303 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 222965 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 230407 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 237890 30835634 ~ 30884613 (-)
G107525 NA other downstream 247845 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 878720 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3432622 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3984382 26569085 ~ 26608339 (-)
G105376 NA other downstream 4351716 26239330 ~ 26241005 (-)
bbs10 bbs10 other upstream 130300 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 187849 30785593 ~ 30849697 (-)
G107803 NA other upstream 218835 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 321440 30919184 ~ 30989204 (-)

Expression


Co-expression Network