mmp23bb (LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605)


Basic Information

Item Value
gene id mmp23bb
gene name LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23590945 ~ 23610448 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914176.2
TCCAGATCTCGCGCTCAGGACACATGGCTAAAGTTCGGATGcaaataaaacagcaataaaGGCGAATAAGGTGGCCTCAGTGTGAAGTCAGGTGGACTGTTATCATGCGAAAGTTTCCTGTGGGGGTGGGAAGAGACTTTTAGTCTTTTGGATGAACAGTTTTGCAGGTTTATTTCTCCAGAAAAACGCGCGGATGCGCCAGGATTTTGGATGGAGGAATAAAATTCAGGGCGCGTGAGTGCTGTTGAGAATAAAGTCGCGTGCTGGTTTGTTGAAAAGGCTGTGAATTGAGTAAAAGCCTGTTTTGGAGATGAGGTGGATTTGGACAGGAATTGTGCTTGTGGCACTGTTGGTGCTGGGGATAGTGTTTTCTGCCGGCATCTGGAGGAGACAGCAGGAGAGTCGTGTGTCTGCGAGTGGAGGACCGAGAGAATCGCCAGTTCGAGCCAAACGCTACGCCATCAACCCGCTGGGCTACAAGTGGGAGCACTTCAACATCACTTACAAGATCACAACGTTCCCCAACACGCTGAATAAAGATGACACCCGTAAAGCCATCAGTATTGCCTTCACCAAATGGAGCGATGTCTCACCTCTGACCTTTACAGAAATCACCAACCCTAACAAGAGTGCTGATATCATTATTGGCTTCTACACGTTTAATCACACAGACTGCTGGTGGTCTCCGCTGCACCCCTGCTTTGACGGGCTGAACGGAGAGCTGGCTCATGCCTTCCTGCCCCCGAGAGGGGAGATCCACTTTGACAACCACGAGTTCTGGATCCTGGGCAAATCTCGGTTCAGCTGGAAACAGGGTGTATGGCTCAATGACCTGGTTCAGGTAGCAGCCCATGAGATCGGTCATGCTCTCGGTCTGTGGCATTCACGTGACCCCGGCGCTCTGATGCACCCCAACGCCACATACACGGGGCAGCGAGACATCGCTCAGGATGATATCTGGGGAATTCAGCGTCTTTATGGCTGTTTGGATAAGAAGCGTGTGTGTGACCCCTGGGCAAGGTTAGGCTTCTGTGAGAGTAGACGGAGTTTCATGAAGAAACACTGCCCTCAGCGCTGTGACCTGTGTTACGAGCCCCCGGAAGCTGGGTCTACTCccactcctcctcctgccaACGTCAAGATCAAGATGGTGCCTCGGGGAAAAGTAGTGGGCTTCCGCTGTGGGACCAAAAACACGAAAGTGCCTCCAAAAGTCAGGTGGTATAAGGACGGAGAACAGCTGCTGACCTCCATTCCTGGCTACATTGCCATCAAAGATCGCAATCTGCGCATCGTGGCTAACGAATTCAACGAGGGAACGTACACCTGCCAGATCCACCGGCGCGGCAGTGTCATTTCAGCTAACTCGTGGGCCATCAGGCTGAAACCGGAACGTCCCTCGAACAACAGTTGatggtgatggagtgatggagaagCACTTACACTACCTCCTGCACTCTCGACCACTCAGAACGACTCATTACCTCACATTCAGAGTCTCTCAGTGGGGGATATCATGGACCAGGTTCATCCAGAAACGCTTCAGAAGACTCAAGCTGAAACACAAGGGCTGTACAGTAGAAGCATAAGCATTTAGAGCTTTTTTTATAAGTATgcttattattgatttattactttgtttctttgctgaacagaaattttacaaaaagtattttttatccTATCAAGCTCATTACATCATGGTTAGTGACCTAAGACAGGATTATGGTAGAGCAATTATAGAAATTCTTTATATTTGTAATGAGACGTCATGCAGAACAGATTacctttttatgtttattacagaATATGCATTAGACAACATACTGATGATGGCGGTTCtcagtgagagaaaaacaataagaaaaacTCAGTGAGGTAGGCACTTTATCGCTTCATAAACCATGCtgtaaaacagaagaaaaagaaagatacagaaaagaaaatacagtgaTAGAAGGTAGTACTGAATCAGGCTTTATCCCTATAAACAACATTCACACATagttaacacatttaaaaaaaaaattttaattaaatatatatttaaacagcTTCAGTCATCTACTGCGGGGGAGCAATGAAGCAGCTGAGgcaactgcatcttttttttttttttttacttgtaatTAAATGAATGCATCATAAAAATTTATCTGAATTTATTAacagtgttgctgcctcacagctccaaggtcaccggttcaatcctgagctcaggttactgctTGTGTGTTGTTTCAgatggtttcctctgggttctctggtttcctcccacttcccaaaaacatgccagtaggtggtttgactatgctaaatttcccctatgtgtgaatgagtgtaaatAGGCTCGGGATCCACCACAACGCTGAACAGGATGAAGCTGAATAAATGAGtgagttactgaagatgaatgaaagataCACCAGGTTGCCATATAGGTcactttatatatgtataaattacTGTAGCCTTTAGCCTATTTGTTGTTATACACAGGTAGCAttaccacctcacagctccagggtcgaGGGATTGATCATCAGCTCATGTTCTACTCATGTgaatgtgggtttcctcccccttcccaaaaacatgcagatgcAACATGCAGGTGGATTGGTAGCTCCAAACTGGATAAAGttgttattaaatatgtatgaataaaaaaaacagatgggtTACAGTCAGtgatta
>XR_004578330.1
TCCAGATCTCGCGCTCAGGACACATGGCTAAAGTTCGGATGcaaataaaacagcaataaaGGCGAATAAGGTGGCCTCAGTGTGAAGTCAGGTGGACTGTTATCATGCGAAAGTTTCCTGTGGGGGTGGGAAGAGACTTTTAGTCTTTTGGATGAACAGTTTTGCAGGTTTATTTCTCCAGAAAAACGCGCGGATGCGCCAGGATTTTGGATGGAGGAATAAAATTCAGGGCGCGTGAGTGCTGTTGAGAATAAAGTCGCGTGCTGGTTTGTTGAAAAGGCTGTGAATTGAGTAAAAGCCTGTTTTGGAGATGAGGTGGATTTGGACAGGAATTGTGCTTGTGGCACTGTTGGTGCTGGGGATAGTGTTTTCTGCCGGCATCTGGAGGAGACAGCAGGAGAGTCGTGTGTCTGCGAGTGGAGGACCGAGAGAATCGCCAGTTCGAGCCAAACGCTACGCCATCAACCCGCTGGGCTACAAGTGGGAGCACTTCAACATCACTTACAAGATCACAACGTTCCCCAACACGCTGAATAAAGATGACACCCGTAAAGCCATCAGTATTGCCTTCACCAAATGGAGCGATGTCTCACCTCTGACCTTTACAGAAATCACCAACCCTAACAAGAGTGCTGATATCATTATTGGCTTCTACACGTTTAATCACACAGACTGCTGGTGGTCTCCGCTGCACCCCTGCTTTGACGGGCTGAACGGAGAGCTGGCTCATGCCTTCCTGCCCCCGAGAGGGGAGATCCACTTTGACAACCACGAGTTCTGGATCCTGGGCAAATCTCGGTTCAGCTGGAAACAGGGTGTATGGCTCAATGACCTGGTTCAGGTAGCAGCCCATGAGATCGGTCATGCTCTCGGTCTGTGGCATTCACGTGACCCCGGCGCTCTGATGCACCCCAACGCCACATACACGGGGCAGCGAGACATCGCTCAGGATGATATCTGGGGAATTCAGCGTCTTTATGGCTGTTTGGATAAGAAGCGTGTGTGTGACCCCTGGGCAAGGTTAGGCTTCTGTGAGAGTAGACGGAGTTTCATGAAGAAACACTGCCCTCAGCGCTGTGACCTGTGTTACGAGCCCCCGGAAGCTGGGTCTACTCccactcctcctcctgccaACGTCAAGATCAAGATGGTGCCTCGGGGAAAAGTAGTGGGCTTCCGCTGTGGGACCAAAAACACGAAAGTGCCTCCAAAAGTCAGGTGGTATAAGGACGGAGAACAGCTGCTGACCTCCATTCCTGGCTACATTGCCATCAAAGATCGCAATCTGCGCATCGTGGCTAACGAATTCAACGAGGGAACGTACACCTGCCAGATCCACCGGCGCGGCAGTGTCATTTCAGCTAACTCGTGGGCCATCAGGCTGAAACCGGAACGTCCCTCGAACAACAGTTGatggtgatggagtgatggagaagCACTTACACTACCTCCTGCACTCTCGACCACTCAGAACGACTCATTACCTCACATTCAGAGTCTCTCAGTGGGGGATATCATGGACCAGGTTCATCCAGAAACGCTTCAGAAGACTCAAGCTGAAACACAAGGGCTGTACAGTAGAAGCATAAGCATTTAGAGCTTTTTTTATAAGTATgcttattattgatttattactttgtttctttgctgaacagaaattttacaaaaagtattttttatccTATCAAGCTCATTACATCATGGTTAGTGACCTAAGACAGGATTATGGTAGAGCAATTATAGAAATTCTTTATATTTGTAATGAGACGTCATGCAGAACAGATTacctttttatgtttattacagaATATGCATTAGACAACATACTGATGATGGCGGTTCtcagtgagagaaaaacaataagaaaaacTCAGTGAGGTAGGCACTTTATCGCTTCATAAACCATGCtgtaaaacagaagaaaaagaaagatacagaaaagaaaatacagtgaTAGAAGGTAGTACTGAATCAGGCTTTATCCCTATAAACAACATTCACACATagttaacacatttaaaaaaaaaattttaattaaatatatatttaaacagcTTCAGTCATCTACTGCGGGGGAGCAATGAAGCAGCTGAGgcaactgcatcttttttttttttttttacttgtaatTAAATGAATGCATCATAAAAATTTATCTGAATTTATTAacagtgttgctgcctcacagctccaaggtcaccggttcaatcctgagctcaggttactgctTGTGTGTTGTTTCAgatggtttcctctgggttctctggtttcctcccacttcccaaaaacatgccagtaggtggtttgactatgctaaatttcccctatgtgtgaatgagtgtaaatAGGCTCGGGATCCACCACAACGCTGAACAGGATGAAGCTGAATAAATGAGtgagttactgaagatgaatgaaagataCACCAGGTTGCCATATAGGTcactttatatatgtataaattacTGTAGCCTTTAGCCTATTTGTTGTTATACACAGGTAGCAttaccacctcacagctccagggtcgaGGGATTGATCATCAGCTCATGTTCTACTCATGTgaatgtgggtttcctcccccttcccaaaaacatgcagatgcAACATGCAGacgttacagtgtcagaaaccacatataCTCAACAATTCGACAAGGTTCGAGGTGCGTAACATGAGCATTGTGACTCCAGTCCAAAActaagaagcaaacttcagaaactaaacatgtcttggctgatgaAGGAGATCTGGAGTAAGtaaaaaaactgtttactttttttgggaaaaagtTTCTTTAAATCAGGGACATGTAATAAAACCCAGGAcaaatgcaaaaacacaataGGAATAAGACTTACATTTATTGTGACAGATTAGAAATTAAAGACACTGATTATTAAGCAAACGTgacagaataataaaattaggATACTTAAAAATAGTCTTTGTCCTTGAACACATATGCTATGGCTTTCGCCCTCACAGTGAAACGATTATGTTCAGTTTTTTATTATGGCAATAAATCCAGTGTTTTGTAGTCTATGTGTTGTTTATGTTGAGACAGAAGAGAATGTAATAAGCTTTAAAGGAACAGCAGTTCAGCCAAGCCAactgtttgttttagttttgtaCAAGATGTAGCTCACAAGCATGGGacagctaccagtttagcattttgCAACCTTAATATATGTAAACTCACATCAACAGATGTCACGTGACTTAGTCAGACTGTTTGTGCATAAACAGCATTGTACAAACTACATGCAAAAATGATACACTTGCCTAAAACTGTCATTGCTAAGTCACTTCATATAGACTTgcttatgtggtttctgactaactggtagctataagctttCCTTAgttgttagctacattatcaTTGTAGCTCatgtataaaattaaagaaacaaactttATACACCAAACATGACTTGGCTGAGAGGAACtctgtgtacatttcatttttggctaaAACGAACAAGGAACAGTTTAAGAGGTGCATGTGCGCATGGATTGTTACATCTGTTGGCTGTAAAGAACTAAAAagggaaacaaaacaaaacaatggtgcagtgtgtgatgtgacagtAACACTGAGGGTCACAGTGGTGTGCAGTGAGAGTCATACTGGACTTAACAACTTGTGCACAAATCAAATGTGTAGAAAAGACGCAAA

Function

NR:

description
PREDICTED: matrix metalloproteinase-23-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0001889 liver development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914176.2 False 2697 mRNA 0.45 8 23594509 23610448
XR_004578330.1 True 3685 misc_RNA 0.43 9 23590945 23610448

Neighbor

gene id symbol gene type direction distance location
mtif2 mtif2 coding downstream 8865 23578039 ~ 23582080 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding downstream 19923 23559123 ~ 23571022 (-)
dcun1d5 dcun1d5,LOC107712802 coding downstream 33411 23547392 ~ 23557534 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding downstream 55265 23513393 ~ 23535680 (-)
myo7aa myo7a,myo7aa coding downstream 86648 23455693 ~ 23504297 (-)
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding upstream 4923 23615371 ~ 23632367 (-)
LOC113526489 dvl3,LOC107670590,LOC107575491,LOC107671937,LOC107758060,LOC107717599 coding upstream 23629 23634077 ~ 23678458 (-)
abcc5 abcc5,LOC107670605,LOC107671530 coding upstream 91336 23701784 ~ 23731415 (-)
depdc7a depdc7,LOC107576633,LOC107758055 coding upstream 155089 23765537 ~ 23786329 (-)
qser1 qser1 coding upstream 183742 23794190 ~ 23815913 (-)
G103820 NA non-coding downstream 15266 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 77617 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 260844 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 267533 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 315663 23270144 ~ 23275282 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 804452 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 923289 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1503529 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1581609 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 1628662 25239110 ~ 25241770 (-)
si LOC108264758,LOC108431149 other downstream 1284176 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2577845 20995341 ~ 21013100 (-)
G102566 NA other downstream 2624035 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3174371 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 3610686 19980069 ~ 19980259 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 38236 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 122422 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 869854 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 1013068 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 1021191 24631639 ~ 24661978 (-)

Expression


Co-expression Network