wash1 (wash1,LOC103045331,LOC107686618,LOC107564895)


Basic Information

Item Value
gene id wash1
gene name wash1,LOC103045331,LOC107686618,LOC107564895
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27546497 ~ 27557970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914196.2
GTTAGTTATAATCTTCTGTCATGTGACCAAGGGACGCGGAAGTTTTGATCTGGAAGACCTGTGCAGCTTCTTCAGTCTGTGATGCGAGGAAAGAAAATCGTCTTGTTTTAAAGTTTAGAGCTCGACTTTCTAAATGGGCAGgatgactCAGAAGCACCACCTGGAGGGCCAGGTCTATTCTGTGCCACTGATCCAGCAGGACCTGCGGAGGGAAGAGGCCATGCACCAGATCACTGATGCCCTGCAGTACCTGGAAAATATCTCGACTGATATCTTCAGCAGGGTGTCTCAGAGTGTGGAGAGGAACCGTGCTCACCTTCAGGCCGTCACTGACCGCATTAAACTGGCTCAAGCTCGAGTTCAAAAGATTAAAGGAAGCAAGAAAGCCACCAAGgtgttttCCAGTGCTAAATATCCTGCTCCTGAGAAACTTCAGGATTATTCTTCCATATTTACGGGTGCTGTAGATCCAGCATCTCAGAAACGACCTCGCTACAAAGTTCAGggcaagctccgccccctggaTGACAAGGCCTTACAGGAGAAGTTGATGTATTTTCCAGTCTGTGTGAACACTAAGAAGCGCTCAGAGGATGAGACGGAGGAGGGACTGGGGAGTCTGCCAAGAAACATCAGCTCCGTCAGCTCTCTGCTGCTCTTTAACACCACAGAGAACCTGTATAAGAAGTACGTGTTCCTGGATCCTCTGGCGGGAGTCGTCACTAAAACCCACAACACActagagacagagaaggaggaAAAGCCGTTTGACGCGCCACTGTCTATCACTAAACGAGAGCAACtagagagacagactgCAGAGAATTATTTCTATGTGCCAGACCTGGGGCAAGTGCCCGAGATCGATGTGCCCTCTTATCTGCCCGACCTGCCTGGCATCGCTGATGACCTCATGTACAGCGCTGACCTCGGCCCAGGCTTCGCCCCTTCTGGTGCTGGCAATGCGACCATGCCAGAGCTGCCCTCTTTTGGCACAGAACAGGAAGAAGGCTCCCAGTTTCGATCCGAggctcctcctccacctccgcctccacctcctccacccccTCCTCCTGAGTCTCCTCAGGTTACAGCTCCTCCCCTTGGAGCTCCTCCAGccccgcctcctcctcctccaccgcCTCCCGCTGTTCCAGATGACACAGGTGGCGGAGGTGTGTCCAGTCATGCCCCGCCCACAGgtgcaGTAAAAGGTGCCCCTACAGAGGTTCTGCAGCCGTCGGATGGGCGAGCCAGCTTGCTCGAGTCTATTCGTAACGCTGGCGGCATCGGTAAAGCCAAACTGCGCAATGTTAAAGAGCGAAAGatggagaagaagaaacagaaggagCAGGAGCAAGTTGGAGCAGCAGCCAGTGGAGGAGATTTCATGTCCGATCTCTTTAATAAATTGGCCATGCGGAGGAAAGGTATCTCAGGTAAAGTCCCAGGAGGCGGAGACGCGGCAGAACCGCCTGGCAGCTCCGGCAGCGCGTTCGCCAGAATGTCAGACGTGATCCCGCCCCTTCCTGCTCCTCAACAGCCAACTGCGGAGGACGACGATGACTGGGAGGCGTAG

Function

symbol description
wash1 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; early endosome; and recycling endosome. Predicted to be part of WASH complex. Orthologous to several human genes including WASHC1 (WASH complex subunit 1).

NR:

description
PREDICTED: WAS protein family homolog 1

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0055038 recycling endosome membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0071203 WASH complex cellular_component
GO:0043014 alpha-tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18461 WASH1; WAS protein family homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914196.2 True 1579 mRNA 0.54 11 27546497 27557970

Neighbor

gene id symbol gene type direction distance location
fkbp4 fkbp4,LOC107686573,LOC107705800 coding downstream 21981 27515680 ~ 27524516 (-)
LOC113526458 chst1,LOC108432931 coding downstream 166949 27376837 ~ 27379548 (-)
LOC113526781 LOC108264218 coding downstream 231697 27311961 ~ 27314800 (-)
LOC113526860 LOC108443293,LOC108264217 coding downstream 242767 27298985 ~ 27303730 (-)
LOC113526686 LOC108264731,LOC108432714 coding downstream 249326 27203767 ~ 27297171 (-)
ptprq ptprq,LOC108413201,LOC107705767 coding upstream 44256 27602226 ~ 27658837 (-)
otogl otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679 coding upstream 104438 27662408 ~ 27708771 (-)
si:ch73-386h18.1 zfhx3,LOC108264658 coding upstream 176369 27734339 ~ 27768803 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding upstream 223851 27781821 ~ 27823226 (-)
wdr59 wdr59,LOC107686576 coding upstream 267354 27825324 ~ 27846822 (-)
LOC113526487 LOC108264058 non-coding downstream 357705 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 401623 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 417325 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 438926 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 670663 26875595 ~ 26875834 (-)
G106193 NA non-coding upstream 221162 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 303870 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 386846 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 395548 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 396294 27954264 ~ 27954479 (-)
si:dkey-151j17.4 NA other downstream 386398 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 938158 26569085 ~ 26608339 (-)
G105376 NA other downstream 1305492 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1997569 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2466985 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 2062829 29620799 ~ 29714001 (-)
G107525 NA other upstream 2785561 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3170074 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3227623 30785593 ~ 30849697 (-)
G107803 NA other upstream 3258609 30816579 ~ 30820422 (-)

Expression


Co-expression Network