LOC113526894 (LOC108263898)


Basic Information

Item Value
gene id LOC113526894
gene name LOC108263898
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27925890 ~ 27939822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914328.2
ACTGGCCCCAAGTTCTCTGTACTACATTTTGTGGACTTTCACAACTTTTCTGGGACTTTTGAAGTGAGTTTAAAGACTCAGGACATTTAACAAGATTCCCCAGATTCTTTTGAGCATTGTGTAAGTTTTTATCAGGAAAATGAGTCAACTTCGCACCATACTGCTGATTATGTGTATCGGTCAGATTCACAGCATCTATGGGCAGGAATGTCCCAGTACACAGGAGCTGCAGAATTCCCTACGCCAAGCACAAAAGCTGCTGGCATCACATGAGGCCTCGTACCTGCAGAGTCTCCGCAGCCTGAAGAGGAAAATCAGTCAGCTGCAGAACAGCACGGCCCGTGTGGCTGCCAAACCCAGTGATGCTTCCTGTCCAAAACTGGAGGCACCCCTCAATGGACGAAAATTAGGGAAAGTTCTACTGCCGGGTCATGAGGTTCACTTCCTGTGTGACTCAGGCTACGAGCTGGTGGGCTCTGAGACTCGGCAGTGTAAGGAGTCGCTCACCTGGAGCGGCCAACAACCTGTCTGCAAGGAAATAAACGAGTGTGCCTCTTCTCCCTGTGCCAATGGGGGTTCATGCACAGATGAAGTGAATGGATTCACATGCGCATGTGCCAGAGGATGGGCTGGACCTACGTGCCAATCTCCAACGCCAACATTTTTTGCCACCACAACCAACATCTCTGCTGCCACCTCTGGAGCTGCAGCTGCCACCTCGTTTCCTTTAACAACTCTGCTTCCATTTGTGCAGCCGTCCAAGTGCAGCCAGGTCCAGGGcaccacacactgcacctgtGAGGCAGGATATACCATTTCAGGCCGAGACACCAGCATCTGCACAGATATTGATGAGTGTGAAGTGTTCCATAATGGGCCGGCAGGtcgtttgtgtgtgcatgcttgtaTTAACACCCCGGGTGGTTATCGCTGTTCATGCCCAGCTGGCTATGATGTGAGCCGAGACGGCCGAGGCTGCAGAGATATCGATGAGTGCGCCACAAGGCAGAACAACTGCACCCGTGATAGGCTGTGTATTAACACATATGGAGGTTTTCAGTGCGTAAAAGTGGAGTGTCCACGCATCCGAAATGTTACCTATGTCAAAACCTCACCCACGCGCTGTGAAAGgaacccctgccctgtggacaATAAAGCATGTTCTCAGGCTCCCAACTCCGTCTCCTACCACCATATATCAGTGGTGTCAAATCTCTCGGCTCCACGGGTCCTGTTCCGGGTTTCGACAGTGCGGATGATTGGAGACACTCTGCGTTTTGCTGTGCTAGGGAGCCGTGGGCGACGCCATTTCAGCATCCAGCGTTCAGACCGGCAGACCGGcgagctgctgctgctcacCCCCCTGCAGGGTCCTGACACcctggaggtggaggtggagatgaGCGAGCTGGAGAAGAGGGCGCTGATTGGGCGCTACATTACCAAAATCACCATCTTCATCTCACAATATGAGTTCTAGATCCAGAGTT

Function

NR:

description
PREDICTED: fibulin-7-like isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914328.2 True 1490 mRNA 0.52 8 27925890 27939822

Neighbor

gene id symbol gene type direction distance location
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding downstream 47271 27865109 ~ 27878619 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding downstream 66529 27854836 ~ 27859361 (-)
wdr59 wdr59,LOC107686576 coding downstream 79068 27825324 ~ 27846822 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding downstream 102664 27781821 ~ 27823226 (-)
si:ch73-386h18.1 zfhx3,LOC108264658 coding downstream 157087 27734339 ~ 27768803 (-)
LOC113526564 dbndd1 coding upstream 243711 28183533 ~ 28205626 (-)
foxf1 foxf1 coding upstream 289616 28229438 ~ 28233387 (-)
irf8 irf8 coding upstream 475313 28415135 ~ 28422985 (-)
dusp22a ds22a,LOC105892932,LOC108434600,LOC106562285 coding upstream 483975 28423797 ~ 28446938 (-)
LOC113526963 LOC108264246,LOC107731261,LOC107663352,LOC107565335,LOC107572641,LOC108412231,LOC103374647 coding upstream 508917 28448739 ~ 28452315 (-)
G106195 NA non-coding downstream 20861 27861840 ~ 27905029 (-)
G106193 NA non-coding downstream 144090 27779132 ~ 27781800 (-)
LOC113526487 LOC108264058 non-coding downstream 737098 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 781016 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 796718 27123277 ~ 27129172 (-)
G106258 NA non-coding upstream 4994 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 13696 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 14442 27954264 ~ 27954479 (-)
G106264 NA non-coding upstream 23949 27963771 ~ 27964010 (-)
G106265 NA non-coding upstream 25241 27965063 ~ 27966251 (-)
si:dkey-151j17.4 NA other downstream 765791 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1317551 26569085 ~ 26608339 (-)
G105376 NA other downstream 1684885 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2376962 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2846378 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1680977 29620799 ~ 29714001 (-)
G107525 NA other upstream 2403709 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 2788222 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 2845771 30785593 ~ 30849697 (-)
G107803 NA other upstream 2876757 30816579 ~ 30820422 (-)

Expression


Co-expression Network