tmem123


Basic Information

Item Value
gene id tmem123
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24427587 ~ 24433267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914334.2
ATTCAGTAGGATGTCAGTACCGCAGTTTCTTTACGTGGCATACTGTTTCCACATACTGTTTAGGAGGGTAGTGTGCGGTGCTGCTTTCTGCCCGGATTTGGTTTATTTTGAAGATAAATCACACAAGTGCTCTTTCACTGGTGGATCTGGGCTCATCCTAAAAGCTGTGCAGTTCTCCATCTGTGACAGGAATGAAAACCAGCGGCTATTTCATGATTTTCTACCTGACTTTCTTTGACATCTGGGatttaTCAGCCTCTCAAAATTcaagaaatgagagcaaaaCCCATACTACAGCAACTGGGGTATATGTTACTGCTTGGGAAGGACAAGTGACTCTCTCAACTTCAAACTCATCAAGCCATgaatccatcacacacactacaccgtTATTAAGAGCTCCATTTACAACAACAGGGAGTCAAAACACTCCAGTTCCTACATCAGCTCCGTGTTCGCAGGTCCATGTGGCCAGTTTGCTGGGAGGAATGATGCTGGGCTTCATCGTAACGCTGGCTGTGTGTCTGGGCTACAGGTTAATCTGCTTTCGCCAGCAGGGGCGCTATCGAGCTCTaGAACAACATGATGCCATCATATAATAGTGGGACTACTGGAGTGTCGGACGGtcataaaacactgttttatgATGGGAAATGTTCTACTGTACTGTTACATGTCATCGTGAAGTGCCTGTTGCTATTTAATAGCGtttacagaaaacacagaaatacaggTACATTTTAGACTTTCTAGATATTAGGTCTCATTGACCTCTCTGAATatcatcaaacatcatcatcacgtACAGACGACAGCAGAAGTGGActgttgaagattggaaaaagaccagatgatgttTGTCCAATATTCATCTGTCCAGTGTGGGTAAGGCTGTGCCTGCtatagcttcagattcctgttcttggctgacaggagtgaaactcgatgtggtcttctgctgttgtagcccatccgcctcaagatTTGGCGTGTTCTTggttccgagatgcttttctgctcagcacggttgtaaagagtggttaactgagttactgtagcattCTGTCAGAGTCTGGCTGTTCTTCTCTACCTCTCTCaccaacaaggtgtttccacccacgggaccgccactcactggatgttttattgtttttcacacGACTGTGTAAAGAGTCAAAATcacatgaacattaactaaccttgtatgtgcatgatttttattgattggttgattagataattgcattaaATATGCAATGTGCTAATACACTGGCTGCTGATTATGTGTGGATGTCTTCagg
>XM_034305056.1
TGTGTGAAAACAAGTCCTTTGTATTCAGTAGGATGTCAGTACCGCAGTTTCTTTACGTGGCATACTGTTTCCACATACTGTTTAGGAGGGTAGTGTGCGGTGCTGCTTTCTGCCCGGATTTGGTTTATTTTGAAGATAAATCACACAAGTGCTCTTTCACTGGTGGATCTGGGCTCATCCTAAAAGCTGTGCAGTTCTCCATCTGTGACAGGAATGAAAACCAGCGGCTATTTCATGATTTTCTACCTGACTTTCTTTGACATCTGGGatttaTCAGCCTCTCAAAATTcaagaaatgagagcaaaaCCCATACTACAGCAACTGGGGTATATGTTACTGCTTGGGAAGGACAAGTGACTCTCTCAACTTCAAACTCATCAAGCCATgaatccatcacacacactacaccgtTATTAAGAGCTCCATTTACAACAACAGGGAGTCAAAACACTCCAGTTCCTACATCAGGTCCATGTGGCCAGTTTGCTGGGAGGAATGATGCTGGGCTTCATCGTAACGCTGGCTGTGTGTCTGGGCTACAGGTTAATCTGCTTTCGCCAGCAGGGGCGCTATCGAGCTCTaGAACAACATGATGCCATCATATAATAGTGGGACTACTGGAGTGTCGGACGGtcataaaacactgttttatgATGGGAAATGTTCTACTGTACTGTTACATGTCATCGTGAAGTGCCTGTTGCTATTTAATAGCGtttacagaaaacacagaaatacaggTACATTTTAGACTTTCTAGATATTAGGTCTCATTGACCTCTCTGAATatcatcaaacatcatcatcacgtACAGACGACAGCAGAAGTGGActgttgaagattggaaaaagaccagatgatgttTGTCCAATATTCATCTGTCCAGTGTGGGTAAGGCTGTGCCTGCtatagcttcagattcctgttcttggctgacaggagtgaaactcgatgtggtcttctgctgttgtagcccatccgcctcaagatTTGGCGTGTTCTTggttccgagatgcttttctgctcagcacggttgtaaagagtggttaactgagttactgtagcattCTGTCAGAGTCTGGCTGTTCTTCTCTACCTCTCTCaccaacaaggtgtttccacccacgggaccgccactcactggatgttttattgtttttcacacGACTGTGTAAAGAGTCAAAATcacatgaacattaactaaccttgtatgtgcatgatttttattgattggttgattagataattgcattaaATATGCAATGTGCTAATACACTGGCTGCTGATTATGTGTGGATGTCTTCagg

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914334.2 False 1301 mRNA 0.44 4 24427587 24433245
XM_034305056.1 True 1309 mRNA 0.43 4 24427587 24433267

Neighbor

gene id symbol gene type direction distance location
arfgap2 arfgap2 coding downstream 60328 24349599 ~ 24367259 (-)
large2 large2,gyltl1b,LOC107670096,LOC107554994,LOC107602128,LOC107670633 coding downstream 157992 24135378 ~ 24269595 (-)
cngb1a LOC108264061,LOC107717637 coding downstream 453399 23932898 ~ 23974188 (-)
kifc3 kifc3 coding downstream 500650 23877707 ~ 23926937 (-)
eif3m eif3m coding downstream 584115 23835172 ~ 23843472 (-)
tbcb tbcb,LOC107687357,LOC107662130,LOC107560142 coding upstream 3023 24436290 ~ 24441614 (-)
qpctla LOC108264841,LOC108433456,LOC107560141,LOC107662147 coding upstream 36700 24469967 ~ 24477972 (-)
c6h19orf47 c4h19orf47 coding upstream 233794 24667061 ~ 24674856 (-)
fosb fosb,LOC108433461,LOC107757073,LOC107554470 coding upstream 247500 24680767 ~ 24686250 (-)
capn12 LOC108264620,LOC108433431 coding upstream 271737 24705004 ~ 24727022 (-)
G103820 NA non-coding downstream 851908 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 914259 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 1097486 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 1104175 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 1152305 23270144 ~ 23275282 (-)
G104320 NA non-coding upstream 100470 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 680710 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 758790 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 805843 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 810205 25243472 ~ 25245244 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other downstream 688808 23732870 ~ 23738779 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other downstream 727880 23648684 ~ 23699707 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 817139 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 2120818 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 3414487 20995341 ~ 21013100 (-)
sipa1l3 sipa1l3 other upstream 47035 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 190249 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 198372 24631639 ~ 24661978 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 318386 24751653 ~ 24764161 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other upstream 610519 25043786 ~ 25079512 (-)

Expression


Co-expression Network