tspan4a (tspan4,LOC106561924)


Basic Information

Item Value
gene id tspan4a
gene name tspan4,LOC106561924
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30137011 ~ 30256084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914459.2
ggagcTCGAGGCAGTGAGATTGGACTGGAGCATCACTGCTGCGGTGTTTTTCCTGCGTGCTGGAAGGAAAACGATCCAGCTTTCAATTTTCCCATGGAATGcatcagaaagagagataaaaacaacaacaaaaaataaaaccccaGAGGATCTGTGAAGAAGTGAGCTGAATTGTTCTGCTGGGATAGCCGGATCTTCAAGAGAACCCAgagtgtggattttttttgttctttgcgTAGAAGGACGAGGGAAAGTGGGAGGAATAAAAAGCAGAGGAGAAGCACAGGTTGAGCGTGTGGAAGGATGGAGTAGGACAACAACCCACGTGGGTCCAGGTCCACTTAAAGCTCTGGACACTAAAGTGGAgcataggattttttttgtcctccttTTTGGATTCCGACTGCATGTGAAGTTTAGGTTGTGTTTAGATGAGCGAGACAGGTGTGGATCACTTGTCtgtctcacctgtctgtctcacctgtctgtctcacctgtctgtctcacctgtcACGCATCAAGCTTTCATTCAGCTCGTATCCGTATCAGAGTGGTGGCTTGTGTGACTTCTGAGTGTCGGATTAAAGCTGGAGCTCATGTGAGGTTCAGATTTTAGGGAttgtgaaggtgaaggtgaaagTGAAGGTGAAGGTGGAGGAGAAAGTGGAGGAGGATTCGCTGAAGGATTTTTAAAGAGAACAGAGTGCATTTGCTTGATAAGATTTTTAGGAAATAAGCTGGAAGTACTGCTATCCAAAAACGTTGACTATTTGGAGTACAGGTTGAAGAGCAGATCAGAGCTCACCTGAGGTTTCGTGTTTGGAGCTGAAGGTGGAGCTGAAGGTGGAGGTGGATTTACTGAGGGACTCTAAAGAGCAAGTGTATTAAGATTAGATTTAAGATCTTCATCTCAAGTGAGACCTTTGGAATTATGTAAACTTTATGCCACACCCAGACGCAGCCACACGttgaacaatttttttgtctcccaaattaaaaaaataaaattttaattctttCCGCATTTTTTTCTGAGCTCTTGATTTGGCAAAGTGGGGACTGTTTGGCCCTCGGGGGCCTCAGCGGCCTCCTCCAATCTGAAGATGCGCCGTTCGAGCACGGATGAGACCCCGTACCGGCGCAGTCCGTCTCTGGACAGTAAGACCGGCTCGGCCCCGTTCTGTTTCGGGAGCGAGCGCGAGCGCCGCAGTGCGCCTTTCGGTTTCAGCTTCCGCACTGCGCCGGGGACAAAGACAGCCAAAGCGGGTTACGCCACGGCGCAGGGCAGGAAGTACGTGGTGTTTTACCTGGACCTCTCCTTCATTTTCCTCCTAGAGCTGCGCCGCTGCAGGATGGCTGAGGGCTGCATGAGGGCCCTGCGCTACGCCATGGTGTTCTTCAACCTGCTCTTCTGGCTGGGGGGATGTGGGATTCTGGGAGTGGGCGTCTGGCTGTCAGTCACCCAAGGAAACTTCGCTACTCTCTCCACCTCACTACCGTCTCTGTCTGCTGCCAATCTCCTCATCGCCGTGGGAACCATCATCATGGTGATCGGCTGCCTAGGCTGCGTCGGCGCCGTCAAGGAGAGCCGGCCCTTGCTTCTCAGCttcttcatcctgctgcttctgaTTTTCCTGCTGGAGATTCTGTTCATCATCCTCTTCTTCGCATATCAGGATCAGattgACCGCTACGCTCAGAGCGACCTGAAAAAAGGCCTGCAGCTGTTCGGCACTGAGGGAAACATCGGCCTGACCAACGCCTGGAGCATCGTCCAGACCGACTTTCGCTGCTGTGGCGTGACCAATCACACCGACTGGTTCGACGTGTACAACGCCACCCGCGTTCCAGACTCCTGCTGTTTGGAATATAGCGACAACTGCGGCCTGGAAAATCCCGGGACGTGGTGGACCGCTccGTGTTACGAACGAGTGAAAAGCTGGCTCCAGGAAAACCTGGTAGCTCTGTGGATTTTCGCTCTGTGCACGGCTCTAACGCAGatcTTAGGGCTGGTGTTCTCCATGACTATCTTCTGCCAGGCTGTGAAAGTGGACACCTTCTACGCCTAGAGAACTGAAATGGATCTAAACCATTTTGTAGGACACATTTttgtgaaaaactgcaaatctcttttcttgttttttttcttttttatttgttgatgtGATATCATTGTTGCGTTCTTCAGCTGGAAGATTGTTTTCCTTCGACAACACCTCTAGCTAACACAGTGTTCACCAAACGATCTTGTAAGAATGAAATGAcaacaaaacattatttttttgtccttaTCTAATATGGTGAAATTTCATTAGCATCCAGAAATCCAATTCAACTCGACGGAAACTCGTtcaagagaagaaagaggactGGTTCGGTTTTATTTCGTGATCCTGTTTGAATCTAACGGCTTACATCGCTTCATTCACCAGTTCCAGcgagcagaagaagaagaagaagaatagaaGAAGAAGTGACGTTTGGAGAGACGCCGCCGGATTCAGAGGAATCATCACTCACTGAAATATCACAGAAAGAGCAGGAAACATTACGGCATGGAAAAGAATAAAAGGAAGTGATGCCCTTTcaaagtgtaaaataataacGTGAGTACTGAACACATTCCAGCAGTGCAGATATCCATGGTTTAAACCGATCAAAAGAAGAGGAGCTTCCTCAAAAAAATGCGTCGTTTCGTCGTCGTCTTCATTACGTAACAAacgtgtgtgtaaatatatgtaattcCTTTGGTATCTTTCAAACGCCATACTTATTATAacgtaaaaatataaataaagcttttataGGGAaagta
>XM_026914460.2
ggagagagaaggagagagagagagagagagagaggagagagagagagagagagagagagagagagaggtttaaaaaggttttaaacaAGCGTTTTTTTAGAGCCAGTGGAAACAGGACAGATTTTCTACGCAGCAGAGTGATTTAAGAGCTGCGCCGCTGCAGGATGGCTGAGGGCTGCATGAGGGCCCTGCGCTACGCCATGGTGTTCTTCAACCTGCTCTTCTGGCTGGGGGGATGTGGGATTCTGGGAGTGGGCGTCTGGCTGTCAGTCACCCAAGGAAACTTCGCTACTCTCTCCACCTCACTACCGTCTCTGTCTGCTGCCAATCTCCTCATCGCCGTGGGAACCATCATCATGGTGATCGGCTGCCTAGGCTGCGTCGGCGCCGTCAAGGAGAGCCGGCCCTTGCTTCTCAGCttcttcatcctgctgcttctgaTTTTCCTGCTGGAGATTCTGTTCATCATCCTCTTCTTCGCATATCAGGATCAGattgACCGCTACGCTCAGAGCGACCTGAAAAAAGGCCTGCAGCTGTTCGGCACTGAGGGAAACATCGGCCTGACCAACGCCTGGAGCATCGTCCAGACCGACTTTCGCTGCTGTGGCGTGACCAATCACACCGACTGGTTCGACGTGTACAACGCCACCCGCGTTCCAGACTCCTGCTGTTTGGAATATAGCGACAACTGCGGCCTGGAAAATCCCGGGACGTGGTGGACCGCTccGTGTTACGAACGAGTGAAAAGCTGGCTCCAGGAAAACCTGGTAGCTCTGTGGATTTTCGCTCTGTGCACGGCTCTAACGCAGatcTTAGGGCTGGTGTTCTCCATGACTATCTTCTGCCAGGCTGTGAAAGTGGACACCTTCTACGCCTAGAGAACTGAAATGGATCTAAACCATTTTGTAGGACACATTTttgtgaaaaactgcaaatctcttttcttgttttttttcttttttatttgttgatgtGATATCATTGTTGCGTTCTTCAGCTGGAAGATTGTTTTCCTTCGACAACACCTCTAGCTAACACAGTGTTCACCAAACGATCTTGTAAGAATGAAATGAcaacaaaacattatttttttgtccttaTCTAATATGGTGAAATTTCATTAGCATCCAGAAATCCAATTCAACTCGACGGAAACTCGTtcaagagaagaaagaggactGGTTCGGTTTTATTTCGTGATCCTGTTTGAATCTAACGGCTTACATCGCTTCATTCACCAGTTCCAGcgagcagaagaagaagaagaagaatagaaGAAGAAGTGACGTTTGGAGAGACGCCGCCGGATTCAGAGGAATCATCACTCACTGAAATATCACAGAAAGAGCAGGAAACATTACGGCATGGAAAAGAATAAAAGGAAGTGATGCCCTTTcaaagtgtaaaataataacGTGAGTACTGAACACATTCCAGCAGTGCAGATATCCATGGTTTAAACCGATCAAAAGAAGAGGAGCTTCCTCAAAAAAATGCGTCGTTTCGTCGTCGTCTTCATTACGTAACAAacgtgtgtgtaaatatatgtaattcCTTTGGTATCTTTCAAACGCCATACTTATTATAacgtaaaaatataaataaagcttttataGGGAaagta

Function

symbol description
tspan4 Enables antigen binding activity and integrin binding activity. Involved in protein-containing complex assembly. Located in plasma membrane and vesicle.

NR:

description
PREDICTED: tetraspanin-4-like isoform X1

GO: NA

KEGG:

id description
K17294 TSPAN4; tetraspanin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914459.2 True 2815 mRNA 0.47 7 30137011 30222358
XM_026914460.2 False 1627 mRNA 0.46 8 30137011 30256084

Neighbor

gene id symbol gene type direction distance location
luzp2 luzp2,LOC107746562,LOC107739427,LOC107656854 coding downstream 72645 29971467 ~ 30064366 (-)
lrch3 lrch3,LOC103027580 coding downstream 370264 29727090 ~ 29766747 (-)
kiaa1549lb LOC108264854,LOC108433503 coding downstream 479202 29599585 ~ 29657809 (-)
spon1a spon1,spon1a,LOC107741890 coding downstream 657579 29398604 ~ 29479432 (-)
syt9a syt9a,LOC108264032,LOC108433937,LOC107728097,LOC107567811,LOC107663989,LOC107689032,LOC107554003,LOC107741892 coding downstream 767460 29345335 ~ 29369551 (-)
tnni1c tnni1,tnni1c,LOC107564917,LOC107705806,LOC107686571,LOC108423488 coding upstream 99437 30355521 ~ 30359530 (-)
miox miox,LOC107705808,LOC107686568,LOC102303880 coding upstream 171096 30427180 ~ 30433055 (-)
adm2b LOC108264181 coding upstream 180945 30437029 ~ 30444319 (-)
LOC113526499 LOC108264175 coding upstream 196623 30452707 ~ 30464074 (-)
ppp6r2b ppp6r2 coding upstream 213876 30469960 ~ 30489913 (-)
G107217 NA non-coding downstream 213818 29922742 ~ 29923193 (-)
G107210 NA non-coding downstream 292154 29765376 ~ 29844857 (-)
G107191 NA non-coding downstream 412634 29724114 ~ 29724377 (-)
G107193 NA non-coding downstream 429111 29680263 ~ 29707900 (-)
LOC113526826 NA non-coding downstream 856828 29273077 ~ 29280183 (-)
G107510 NA non-coding upstream 53763 30309847 ~ 30311846 (-)
G107532 NA non-coding upstream 107543 30363627 ~ 30391458 (-)
G107533 NA non-coding upstream 112254 30368338 ~ 30369188 (-)
G107536 NA non-coding upstream 112803 30368887 ~ 30406964 (-)
G107574 NA non-coding upstream 165168 30421252 ~ 30423338 (-)
hipk3b hipk3,LOC108264637 other downstream 423010 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 2976912 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 3528672 26569085 ~ 26608339 (-)
G105376 NA other downstream 3896006 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 4588083 25385325 ~ 25548928 (-)
G107525 NA other upstream 87447 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 471960 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 529509 30785593 ~ 30849697 (-)
G107803 NA other upstream 560495 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 663100 30919184 ~ 30989204 (-)

Expression


Co-expression Network