edc4 (edc4,LOC107733561,LOC107726309)


Basic Information

Item Value
gene id edc4
gene name edc4,LOC107733561,LOC107726309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15075874 ~ 15105110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927338.2
AAGGAAAAAAACGGCGCACCAGCGGAAGTCAACACAGTTGCAAGATTCTCGTAGGGGCGAgtacaagacaaaaacaagtgGGAATTTGTCACATTGCAACATTTCAGCCCCTTTCAGACCTTATGGCTTCCAGTTCCAGTATAGACATAGAAGGCGCGACTCAGCACCTAAGAGACATCTTAAAACTGGATCGACCCGCTAACTCAGCCGacAGCACTGCAGGCGAGAGCCAGAGGAAGACCTCGTGTAATGGAGAGCTAAACGGCCTGCTGGGAACTGACCTTATTGGAGCAGGAGTTCGAAGTGCTATGATGGAACCAACGGCTCACAGCTCTGACAACATGAATATGGCAGATACTCAGACAATTTCCCTGACTGGTGATGATGACTCTACCTGTATTCCCATAACTGCTAACAATGTGGTAATTGTCGCCAGTCGAGACTCTAGTATTGACAGTAAAGCTCGTGGGAGTAACAAGGTTAAAATCCAGCCAGTGGCAAAATATGATTGGGAGCACAAGTATTACTATGGCAACCTAATAGCAGTGTCTAATTCATACTTGGCATATGCCATTAGAGGTGCCAATAATCACTATATGATACGGGTCCTGAGGTTGGGCTCGTCGGAGCGCACGCTGCTGAAGGGTTTCACCGGGGCCGTCACAGACCTGGCCTTCGCTCATCTTGACTCCACACTGCTGGGCTGCGTGGATGAAGCTGGCAACATGTTCATCTGGCAGCTTACCAGCCAAAACAGCAAAATACAAGATGAAGTGATCGTGCACATCCGGAGACCCGAAGACACACCGCTGAACTCCAGCCGAAGACTCATCTGGTGTCCTTTCATTCCTGAGGACAATgaggagaacccagaggacgGCTGCCAGACACTGGCATTGCTGCATGAAGATAGAGCTGAGGTTTGGGACCTTGACATCCTGCGCTCTAGCAACACTACATGGCCTGTGGATGCTACAGAGATTAAAGAGGGATTCATCGCCATTAAAGGACACACAGCGCGTATCAGCGAGGGAGCTCTGTCTCCAGACGGCACTGTCCTCGCCACAGCCAGTCATGATGGCTATGTCAAATTCTGGCAGATCTACATTGAAGGACAGGACCAACCAAGGTGTCTTCATGAGTGGCAGCCTCATAACGGAAGGCCTCTCTCCTGCCTCCTGTTCTGCGACAACCATAAGAAGCAGGACCCAGAAGTGCCGTTCTGGAGATTCTTAATCACAGGAGCAGATCAGAACCAGGAACTGAAGATGTGGTGCACAGTATCATGGACCTGTCTACAGACTATTAAGTTTAGTCCTGACCCGGTAAATTCGAGTGTTCTGCCCAGTCTGAAAGCCAGTCTGGACCTGTCTGCTGAGTGCCTCATCCTAACAGATGTGCAGAGGAAGGTTCTGTATGTCATGGAGCTCCTACAAGATCAGGAGAAGGGCCATGCCAGCTTTATGGCCGTCTCTGAGTTCTTGCTCACACACCCTGTTCTGAGCTTTGGTGTCCAGGATGTCAGCCGTGCTCGCCTGCGCCACACTGAAGTCCTCCCTCCAGACGAGGAGAGTGAAAGCATGACTACAGAGGGAAGCCAGGGACCTTTGGAGTCAAAATCAGGAATCCAGATCAAGCTTTATTGTGTGCATACAAAGTCCCTTCAGGATGTGCAGATCTGGTTCCAGCCCAACCAGGGTGCTGCTGCCTCCCTGTTTTTGCCTACATGCTCTGGCTCCCAGGACGGCTTTGGGTTTGCAGACCCTTTGACTGATTTGAGCATGGAGGTGTTGAGCTCAGATAAGGAATCTGGTGCAAGCGGTTCGCAGACTGACCTGTGTAAGATCCCCTCTCTCCCGGCTCCAGCTGACTTCCTGAGCCCCTCTGGCTCGACCATGCCCAAACTAATGACCCCGGATGCCTTCATGACACCCAGCGCATCTGTCCCAGCTTCCCCTGGCAGCAGTGCTAGCAGTTTGACTATAGTAACGGCCATAAGCAGCTCAGACAGTGGTCCAAGGGCTGCAGAGGACCTCACCCAGAGCCCTAAGCTGTGTACAGATGCAGCCAGCAGCAGCTTGAACCTCAGTGCCAGCGCTAGCAGCCCAAGAGCCAACTCGATCCTCATTTCAGGCCTGGGCGAGAATATCCAGGTGCTGCCCTCTTCGAACCCCTCCATGTCTCTGGACCTCCAGGCCATGGAACCTGTGCTGCTGCCCCAGGCGTCCCCCACTAGAGCTCGCTCACCTGACGTAATCTCTTCAGCCTCCACGGCCATGTCGCAGGACATCATCCCTGAGATTGCCTCCGAGACATTGCCAAGGGGGTTGGCCGAGGCACGTGACCCCCTCCAGGGCCTTCAGGACAGCATGGCATCAGCAGCCTCAGCCCTGCACCTGCTTTCACCTCTGGAACTGAGTGGAGGAGCATCTGGAGACGGCGAGCAAAGGCTCAGCAGCACACCCTCATTGCTGGAGACGGCGCTGTCGCAGGAAAACGCTGTTAATGTGGTTGCATCATCTTGCTCCGAAAGTGGTGCCAGCCGCAGCTGGCCTGCAGCACCCGATATCACACGCGAGACAAGGAACAGCCTGCGAGATAACGGCCTGGGAGAATGCTCTAGAGAGGACTTGAAGGACATGCACATGTCATCCCCCTTCCACAGACGCACCTACCACCTAACACAGAATGACAGCCAGGATGCCAGTGCAGAGCAGAGCGATCATGACGATGAGGTGGCCAGTCTGGCATCATCTTCAGGAAACTGTGGCTCTCGAGCCTCTCACAGGCTGCCAGTGAAGGACTGGAAGACCTCACCTCGTGGCTCGCCCAAACTCAAGCGCAAAAGCAAGAAAGATGAGGGTGATTGCTCACAGTCCAGGCATATGGATAATCAGATGAGCATGGAGGTACAGGAAGAGCTGCTATTGCTGCTTAGGAGCCAACAGAGGGAGCTGGATGAGCTGCGGCAGAGCCAGCAGGAGTTGTTGCAGAGGCTCACAGGCCACATGGATGCTGTCCAGAGCTCCATAATGGCCCACGTAGAGCACGTTCTGCTCACGCAGCAGGAACAGGGACAAAGAACAATGGAGCGGGTGTTGGCAGAGGGACACGCACGTAACCAGCAGCTTCAGGAGCACATGGCACAGCAGCTGGCTCACACCTTGGGCACTACTGTCTCAAATCGCCTGGACAAAGTGCTGCGTGAGGAGATGAAGAAATCGGTTCCTCAGACCATAACGAAGAGTCTGGAACCCTTGACTGGACAGATGAGTAATGTTATTGCAGCCAAGCTTACTGCAGTGGAGGCCACGCTAAAGGAGAATGTCACCAAAGTTGTAAAGTCTAAGaaCACTACTGATGCCATCGGCCGAGCCGCAGCCGAAGCCATGCAGGGTCCTATCCAGGCAGCCTACAAAGACGCCTTCCAAAGCATTGTGCTCCCTGTGTTTGAGCGTGGATGCCAGTCCATGTTTCAGCAGATAAATGACAGCTTTAAACAGGGAACCAATGAGTACATTCAGCAGCTGGAGACGCATgtcaaaaacaggaagcagcGTGAGCAAGATGCTCGAGACCCTGTAATTGGTCAGCTGCAGCAGATGATTGATTCATTGCAGACTTCCCAAGACCAGCTGGCCACCACAGTAGCAGCAAGTGTGCGCTCTGAGGTTCAGCACCAACTCCACATGATTGTGGGAAATCTGCAGGATTCGATCCTGAGCCAGGTGCAGCGCATTGTGAAGGGTGAGGTGAGCCAGGCCATGAAGGAGCAGCAGGCAGTTGTCACATCCAGCATCATGCAGGCCATGCGCTCAGCGGCCAGCACACCCGTCCCCACTGCCCACCTCGACTTCCAGGCGCAGCAGGCCAGCATCCTGCAGCTGCTGCAACAGGGCCAGCTCAACGAGGCTTTCCAGCAGGCCTTATCTGCGGCTGATCTGAACCTGGTACTGTATGTGTGCGAGACAGTGGACTCTCAGCAGGTGTTTGGCCAGAGCCCCTGTCCCCTGCACCAGGCCGTGCTGCTCTCGCTCATCCAGCAGCTGTCCACCAACCTGGTTACACGCACCGACCTCAAGATCAGCTATCTGGAGGATGCGGTGATGAACCTAGATCATGGTGACCCAGTCACCAGGGACCACATGAGTGCCGTGCTGTCACAAGTGCGTCAGAAGCTGTTCCAGTTCCTGCAGCAGGACCCTCACAGCTCCCTGAGCAAGCGTGCCCGCCGCCTCCTGATGATGCTGCAGGGTCTTgttaaccactaacacactccctCTCCGCCCTCCACTTGCCCATCTGCAGTCTTATCGACTTTCACGCACTCCCACCCTGCCCCCCACCTCCCTTGCCTTGCCTGTACAGCTCACTATGCTTTGCTCAGTAGCACAAATGATCCTCAGCGGGTTGCATGATGGGAGTTGTAGTCCAGACAGAGACACTGTAATTTGCTTTATGAGAgcactacatttcccatcaagCCCTCTGAGATATAGTAGATATAGTATGTGACATTCTTGAGCCATTTTTGCTGTTTGGTCTTTTATTGTTTCTAATAATACGGAAGTAGTTTGGACTGCTTCATGCTGAgacaaaggattttttttgtgctatcATTCTTGCGATGCGAAACTCAGCCCTTGATTTTGTGTTAAAGAACTTGTTTCTGTAATCAGTAAATAATTATACCTTTCGGGAGAAGCTACAACATCTGAATATACCCCACATTGAGCTGCTGGACTCAtgaaacatacacatcatgcaTCTGATTAGTCTACAAATGGTGAACGTTCACATTCATCACATTAAAGGACTTTATATGCCAAAAAGGAGTGCTTAGTTTGGTTTATGTAAAAGCTCTCAGTTGTTACACTGAGAGTTGGTTGACTTTATAAAAGTGTAGTGCTCCTGTTAGGTCTCCAGGGGCAGGAATTTATATGGCTTCCATCTGCATttatatctgtctgtttatttgcttgtctttttttttctccccagccCTGTTGAGAAGCACTGTTTCCCTTGCTTCTATCCCAGATTTATTTCTGCCAACCTTTGCTTTTACTTTTTCAATGTTGTTGGGCAAACTGGCTGAAACCAGAAGCTTGGTTTAGTTCTGCTCAgtttgaaacaaaacaaaaaatatttatgataaaactgaaaaaaaggcaaaaatgcaGTGTGATGGTATTCAGGAATTTATTTGGTCATGTTCTCATCAGAGCAAGGACACATTTACAGAAAGTGCCTTATTAGACATGAGTAATCTGCTTCTGGATCCCCACCAGATGGGCCGTATAGCTTTTTGTGTGAGCTGAATGTCCGCTCCTTAAACATTTATCTTTTTTGCTATTGGGGAGGGATAGAAATGCATCTGGGCAGCCAGATGGTTTcctgaattatttttgttaaaagatTTGGTAGTAGTTGGGTTTTCCCCCaatctgaaaaatattttatgtgaccgatgtgtaaaaaaaacaaaaaaaaaacattctaattAGATGACTATTGTTGGGGCACATTTATGACCACACAGCAGACTGCAGACTTTTCACTTTTGATTTGCATGTaacagcttttttcttttcttttttttttttttaaatttgccaTTCAGGTCCTTCATTATTGATACTTGTACTGTTTAAGTGCTTAAATCACCATAGTTAACTGCTGTTATATTACTAAAACACACAAGCATTGGGGAGTAACTAATAGGGATATGCTAAGCTGAGAATGCTTGCATGCTGCTGAGAAAAGCTGCGTGTATATTCAGTATAAGATACCTGTTTCCGCAAGCTTGTCAATTCCCATTAGTGTTGGGTGTCAGATATGCCAGCACCCAAAGACCTGCTTATCTCATTTTATCCCTCCccttaaattcattcatatgtGTATCTCTTTCACCTTTCATTTCTTAAACAGGTGCTCTGTGGTTGAGTAGTTTGTTTCTGTGCAAGTTTTcagctaaaactaaaactaaccTTCATCTTGTACCACAGCTGTAGGCAGGTAAATGCAGTGTAAAATAATCAGATAGTTTTGATGTTCTTGAGTACTGTTTGAGTTGGATACTGATCAGGGTTATGCATCAGAATCATACAGACATGAATGTCAGAACCTTGCACATAAATGCTCTATGAAACAACTTGTTTTTCCAAGTTTGCATTTAAGATCTAGCTCTTGTTTCATTTATGACAAATATGAATcatttgtaagttttttttttgttttttttttttcttttctttttccttattttggattttgttcCTTGTGCTTGATTtatgttgtatattttacatCTACTTCTTTTACCCTAGATGttttggaataaaaaaagaaaatactttgTTCAGTTATATGTTCAGTTTGATTGTTCATTTTACCATGAAGTGATTAAATGTGACTTATTCCATCAAAATGGAATAGTAAAGAAGCCAAGATATCTGTTTTCTGCTGTCAGCAATAGAACCATTTTGTTCTGATTGATGGAAACATAGCTGGTTATGACCATGTTGTAAATAATCTATGAACTGGGGGTGACTGCAGAAACTGAGTTTACCTGCTAACTCTGTTCTTATTacacagagtttaaaaaaaaaaaaaacctggaaa

Function

symbol description
edc4 Predicted to be involved in deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm and nucleus. Predicted to be active in P-body. Orthologous to human EDC4 (enhancer of mRNA decapping 4).

NR:

description
PREDICTED: enhancer of mRNA-decapping protein 4 isoform X3

GO:

id name namespace
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K12616 EDC4; enhancer of mRNA-decapping protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927338.2 True 6624 mRNA 0.48 29 15075874 15105110

Neighbor

gene id symbol gene type direction distance location
nrn1la nrn1l coding downstream 3379 15043298 ~ 15072495 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 49006 15018958 ~ 15026868 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding downstream 60737 14988788 ~ 15015137 (-)
slc38a8a slc38a8 coding downstream 97724 14969784 ~ 14978150 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding downstream 294321 14771280 ~ 14781553 (-)
nutf2 nutf2 coding upstream 205 15105315 ~ 15119718 (-)
tsnaxip1 tsnaxip1 coding upstream 15937 15121047 ~ 15132206 (-)
pard6a pard6a,LOC107692936 coding upstream 72101 15177211 ~ 15200248 (-)
LOC113534617 LOC108264368 coding upstream 366519 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 380903 15486013 ~ 15499252 (-)
G99493 NA non-coding downstream 426881 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 472402 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 539864 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 556090 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 622767 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 44293 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 55093 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 66201 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 71065 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 192495 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 728866 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1513300 13550680 ~ 13562574 (-)
G98770 NA other downstream 2023563 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2651896 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2670593 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 242056 15347166 ~ 15357563 (-)
G101178 NA other upstream 3082337 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4874959 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5290756 20395866 ~ 20416574 (-)
G102566 NA other upstream 5848492 20953602 ~ 20966910 (-)

Expression


Co-expression Network