tgm2l (LOC108264831,LOC108423869)


Basic Information

Item Value
gene id tgm2l
gene name LOC108264831,LOC108423869
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13494603 ~ 13505452 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927459.2
ATGGGCTCTGgtgcattatttaaatacagGGTCCTGATGAAGGTATATGCATTAAAGGGAAGAAGACTTCTCTAGGCAGTGGCGTGGAACTTAAAGAAGCATTACTGCAATAAGAATTTTGACTGGAGTAATAGACTGGAGTAATACACAAGTCTGACAATGGCCAATCACAAAGCAGTATTTCGAGGTGTGGATCTGCAGTGCAAAGTGAATAACCGTGCTCACCACACAGAAGAAATCGGCACGGAGAGGCTGGTTGTGCGTCGAGGACAGCCCTTCTCTATGCTCCTGCATTGTACAGATTCCCCTCCACTGCCTCCAAACCACCAGCTCACTCTGGTCCTCAACCTGGGTGCACGGGGAGAGGTGGTTGTGAGGGTGTCAGGTTCGAGAGCAGCTCATGGTAAATGGTGGTTCAGTCAGCAGGCTGCTCAAAGTGAGGTGTTGCTGAGGGTCCACAGCCCTGCCGATGCCCCTGTGGGTCAGTACAGCGTTACTGTGCTCTTGCTCTCTTCTGAGGGACACATCCTAGAGCAGAGCTCCCCTCATTCCTTTTTCCTGCTCTTCAACCCCTGGTGTAAAGCTGACTCTGTGTATTTGCCTGATGAAGAGCTTCTACAAGAGTACATCCTAAATGAGAATGGCATCCTGTACCAGGGCTCATGGGACCAAATCTCGACTCTGCCCTGGAACTTTGGACAGTTTGAAAAAGGTGTGATGAACATCTGCTTTGAGGTACTGGATAACTCTCCTGCTGCCTTGAAAAACTCTGAGATGGATATCACTAAAAGAGCAGACCCTGTGTACGTTAGTAGGACAATTACTGCAATGGTAAATGCAAATGATGACCGTGGAGTGATATTTGGGCGCTGGGATGGTGAGTACAGCGATGGTGTGTCCCCTACACGCTGGACTGGCAGTGTTCCCATCCTGAGACGCTGGAGTGAGGGAGGAGCTCAGCGGGTGCGTTATGGCCAGTGTTGGGTTTTCTCCGCTGTAGCCTGCacagTTCTTCGCTGTTTGGGCATTCCAACTCGATGTGTCACAAATTACAGCTCAGCCCATGACACCGATGGTAACATCAATGTGGATTGCCTGTTTAATGAACGGCTGGAGAGTGTATCTGAGGGCAGGAATGACATGATCTGGAATTTCCATTGTTGGGTGGAGTCCTGGATGAGCAGAGAGGACCTCCCAAAAGATTATGATGGATGGCAAGTACTTGACCCAACCCCTCAGGAAAGGAGTGATGGTGTATACTGTTGTGGGCCATGTCCGGTGAAGGCAGTGAGAGAAGGTGAGGTGGGGATAAAATATGATGCACCGTTTGTGTTCTCCGAGGTGAACGCAGACATGGTCTACTGGATTATTCATCCAAATGGGGAAAGAACACGAGTGTCGGTGAACAGCACGACTGTAGGAAGAAATATCAGCACTAAAAGTGTGTATGGAGACTACAGGGAAGACATTACTGCTAACTACAAATACCCTGAAGGTTCCATAATGGAGCGAAAGGTCTACGAAAAGGCAGGGAAACAAGTGGTAAGGAAAAATGGACAGCATGGCAAGCTTGAGCTGTCTATCAAGCATGCCCAGGCCATTCATGGAACAGACTTTGATGTAATTGTGGAGGTGCATAATGTTGGAGGAGAAGACACACCTGCTCAGCTTACGGTCACGTCTAATGCTgtcacatacaacagtctccATCTGGGAGAGTGTCAGAGGAAGACTGCCAAACTCACAGTGCCAGCACAGAAAGCTCATAAAGAAGTGCTGAGGCTTCGGTATGATCATTATGGAGCATGTGTATCAGAGCATCACCTGATCAGAGTCAGAGCACTCCTCCAAGCTAGCAGCGAGCAAAATGCCATCATGCAAGAGGTCAACATCCCCTTAAAAATGCCCAAGCTCCACATAAAgATGATTGGAGAAGCAATGGTATCACGTAAGCTGACAGCACTCATCTCCTTCACCAACCCACTGCCTATCACTCTGACAAGAGGGGTGTTTACAgtggagggggcggggctaacaGGAGCACAGGAGATCCAGGCTCCTGGTAATATTGGACCTGGCCAGGATGTTGTAGTGAAATTCTCCTTTAAACCCACTCGAGCTGGCCTGAGGAAGCTGCTGGTTGACTTTGACGCAGATAGACTGAGAGATGTCAAGGGAGAAGCAACTATAATTGTTCAGAAGAAAAGATATGACAATGCTTGAACAACTCAGACACACCGCTCAATACAATTCAACTGATTAAGCTTTAGAAGAAGCTTGTAGTAAACAGCTTCAGAGTAAATAGTAAACAGTAGCTACAAGAGAACATACTGACTTCTCCATATTATAATATCTGCATTTTATCAGTCTTTGTTTTATCACTTAAGTATACCTGTAGCTTGTATAATTTTTgctaaaaactaaaatgataTTTGTTTTGGTATATAAAGCACAAGTAATCTTTGGACAATTCTTTGCCCTTTAGGAATACAAAACTTtgatttaatttgcttttaaataaaatattcacttaTAGGGAAAGCTTGAATTaagtgaattaattaaaaagcaatAAGCATTACATAATATGTTGTTTagagaaaaaatgttttgaaatatttgtgtgtgtgtctctctctctctctctctctcacacacacacacacacacacacacattctagaGACAGATCAGTAAAACCTGAGCAATGACTGATAATACCCTGGACAACATACATTATTTGAAATTCTGTTTCATTGCATTCTGCATGAATCTCAATAGTCCATGAGCTCTGCTGCTTACTGCACATCAACAAATCAAGACTGAGCAGTGAATAGTAATCTTATTGTTTCattgtgattttgtgtgaaatgtATTATATCTTTTGTTTATgagtgattttatatatatacacacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcaaa
>XM_026927460.2
ATGGGCTCTGgtgcattatttaaatacagGGTCCTGATGAAGGTATATGCATTAAAGGGAAGAAGACTTCTCTAGGCAGTGGCGTGGAACTTAAAGAAGCATTACTGCAATAAGAATTTTGACTGGAGTAATAGACTGGAGTAATACACAAGTCTGACAATGGCCAATCACAAAGTATTTCGAGGTGTGGATCTGCAGTGCAAAGTGAATAACCGTGCTCACCACACAGAAGAAATCGGCACGGAGAGGCTGGTTGTGCGTCGAGGACAGCCCTTCTCTATGCTCCTGCATTGTACAGATTCCCCTCCACTGCCTCCAAACCACCAGCTCACTCTGGTCCTCAACCTGGGTGCACGGGGAGAGGTGGTTGTGAGGGTGTCAGGTTCGAGAGCAGCTCATGGTAAATGGTGGTTCAGTCAGCAGGCTGCTCAAAGTGAGGTGTTGCTGAGGGTCCACAGCCCTGCCGATGCCCCTGTGGGTCAGTACAGCGTTACTGTGCTCTTGCTCTCTTCTGAGGGACACATCCTAGAGCAGAGCTCCCCTCATTCCTTTTTCCTGCTCTTCAACCCCTGGTGTAAAGCTGACTCTGTGTATTTGCCTGATGAAGAGCTTCTACAAGAGTACATCCTAAATGAGAATGGCATCCTGTACCAGGGCTCATGGGACCAAATCTCGACTCTGCCCTGGAACTTTGGACAGTTTGAAAAAGGTGTGATGAACATCTGCTTTGAGGTACTGGATAACTCTCCTGCTGCCTTGAAAAACTCTGAGATGGATATCACTAAAAGAGCAGACCCTGTGTACGTTAGTAGGACAATTACTGCAATGGTAAATGCAAATGATGACCGTGGAGTGATATTTGGGCGCTGGGATGGTGAGTACAGCGATGGTGTGTCCCCTACACGCTGGACTGGCAGTGTTCCCATCCTGAGACGCTGGAGTGAGGGAGGAGCTCAGCGGGTGCGTTATGGCCAGTGTTGGGTTTTCTCCGCTGTAGCCTGCacagTTCTTCGCTGTTTGGGCATTCCAACTCGATGTGTCACAAATTACAGCTCAGCCCATGACACCGATGGTAACATCAATGTGGATTGCCTGTTTAATGAACGGCTGGAGAGTGTATCTGAGGGCAGGAATGACATGATCTGGAATTTCCATTGTTGGGTGGAGTCCTGGATGAGCAGAGAGGACCTCCCAAAAGATTATGATGGATGGCAAGTACTTGACCCAACCCCTCAGGAAAGGAGTGATGGTGTATACTGTTGTGGGCCATGTCCGGTGAAGGCAGTGAGAGAAGGTGAGGTGGGGATAAAATATGATGCACCGTTTGTGTTCTCCGAGGTGAACGCAGACATGGTCTACTGGATTATTCATCCAAATGGGGAAAGAACACGAGTGTCGGTGAACAGCACGACTGTAGGAAGAAATATCAGCACTAAAAGTGTGTATGGAGACTACAGGGAAGACATTACTGCTAACTACAAATACCCTGAAGGTTCCATAATGGAGCGAAAGGTCTACGAAAAGGCAGGGAAACAAGTGGTAAGGAAAAATGGACAGCATGGCAAGCTTGAGCTGTCTATCAAGCATGCCCAGGCCATTCATGGAACAGACTTTGATGTAATTGTGGAGGTGCATAATGTTGGAGGAGAAGACACACCTGCTCAGCTTACGGTCACGTCTAATGCTgtcacatacaacagtctccATCTGGGAGAGTGTCAGAGGAAGACTGCCAAACTCACAGTGCCAGCACAGAAAGCTCATAAAGAAGTGCTGAGGCTTCGGTATGATCATTATGGAGCATGTGTATCAGAGCATCACCTGATCAGAGTCAGAGCACTCCTCCAAGCTAGCAGCGAGCAAAATGCCATCATGCAAGAGGTCAACATCCCCTTAAAAATGCCCAAGCTCCACATAAAgATGATTGGAGAAGCAATGGTATCACGTAAGCTGACAGCACTCATCTCCTTCACCAACCCACTGCCTATCACTCTGACAAGAGGGGTGTTTACAgtggagggggcggggctaacaGGAGCACAGGAGATCCAGGCTCCTGGTAATATTGGACCTGGCCAGGATGTTGTAGTGAAATTCTCCTTTAAACCCACTCGAGCTGGCCTGAGGAAGCTGCTGGTTGACTTTGACGCAGATAGACTGAGAGATGTCAAGGGAGAAGCAACTATAATTGTTCAGAAGAAAAGATATGACAATGCTTGAACAACTCAGACACACCGCTCAATACAATTCAACTGATTAAGCTTTAGAAGAAGCTTGTAGTAAACAGCTTCAGAGTAAATAGTAAACAGTAGCTACAAGAGAACATACTGACTTCTCCATATTATAATATCTGCATTTTATCAGTCTTTGTTTTATCACTTAAGTATACCTGTAGCTTGTATAATTTTTgctaaaaactaaaatgataTTTGTTTTGGTATATAAAGCACAAGTAATCTTTGGACAATTCTTTGCCCTTTAGGAATACAAAACTTtgatttaatttgcttttaaataaaatattcacttaTAGGGAAAGCTTGAATTaagtgaattaattaaaaagcaatAAGCATTACATAATATGTTGTTTagagaaaaaatgttttgaaatatttgtgtgtgtgtctctctctctctctctctctcacacacacacacacacacacacacattctagaGACAGATCAGTAAAACCTGAGCAATGACTGATAATACCCTGGACAACATACATTATTTGAAATTCTGTTTCATTGCATTCTGCATGAATCTCAATAGTCCATGAGCTCTGCTGCTTACTGCACATCAACAAATCAAGACTGAGCAGTGAATAGTAATCTTATTGTTTCattgtgattttgtgtgaaatgtATTATATCTTTTGTTTATgagtgattttatatatatacacacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcaaa

Function

NR:

description
PREDICTED: protein-glutamine gamma-glutamyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927459.2 True 2966 mRNA 0.44 13 13494603 13505452
XM_026927460.2 False 2963 mRNA 0.44 13 13494603 13505452

Neighbor

gene id symbol gene type direction distance location
aars1 aars,LOC107686288,LOC107738729 coding downstream 3319 13475531 ~ 13491284 (-)
sf3b3 sf3b3 coding downstream 53801 13411360 ~ 13440802 (-)
LOC113534846 NA coding downstream 57628 13436901 ~ 13436975 (-)
il34 NA coding downstream 89873 13398275 ~ 13404730 (-)
lonp2 lonp2,LOC107686284 coding downstream 98910 13374859 ~ 13395693 (-)
arl2bp arl2bp,LOC108264832,LOC107686354 coding upstream 16699 13522151 ~ 13525974 (-)
ppcdc ppcdc,LOC107583771,LOC107742893,LOC107686355,LOC107738727,LOC107672202 coding upstream 66401 13571853 ~ 13575817 (-)
ints14 vwa9,LOC107583765,LOC107596981 coding upstream 77476 13582928 ~ 13588984 (-)
dennd4a dennd4a coding upstream 107344 13612796 ~ 13643572 (-)
trnaq-cug_10 NA coding upstream 139957 13645409 ~ 13645480 (-)
LOC117597528 NA non-coding downstream 176595 13311395 ~ 13318008 (-)
G98790 NA non-coding downstream 312053 13182343 ~ 13182550 (-)
G98776 NA non-coding downstream 359430 13129200 ~ 13135173 (-)
G98767 NA non-coding downstream 466006 13027458 ~ 13028597 (-)
G98607 NA non-coding downstream 656061 12838220 ~ 12838542 (-)
G99118 LOC108280567 non-coding upstream 140123 13645575 ~ 13647786 (-)
G99134 NA non-coding upstream 227499 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding upstream 259474 13764926 ~ 13765056 (-)
LOC113534347 NA non-coding upstream 277323 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding upstream 278103 13783555 ~ 13783624 (-)
G98770 NA other downstream 442292 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1070625 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1089322 12396507 ~ 12405281 (-)
admb NA other downstream 1149151 12311822 ~ 12345452 (-)
sspn sspn other downstream 1616399 11870908 ~ 11878204 (-)
c6h15orf39 c4h15orf39 other upstream 45228 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 830484 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1841714 15347166 ~ 15357563 (-)
G101178 NA other upstream 4681995 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6474617 19980069 ~ 19980259 (-)

Expression


Co-expression Network