LOC113526953


Basic Information

Item Value
gene id LOC113526953
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27132129 ~ 27138338 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304982.1
ATGGTGAAGACATCGCTTTTCACTACAGCCCTCGCTTTGGTCTATGTGAACGGTTTAAGACATTGCACATTCAAGCACCGCATTCCTCTAGAGAAAGTGTCTACAGTTAACGTTTGGGGAAATGTTTCCCTCCTCGTCTGTGGCTTTATTGATAGCTGGAGCACTACTTCATCCTTTACGGAACTAAAGAAAATCACAAGCACACAGAGCGCAACCTCGAGTTTGACATCTATACCTTTAGAGATTTCACATCCTGTCAGTAACCCTGCACTTCCCTATGTGGGTAACATCCCAGGAGGGATACATCAAGACAGGGCTGTATTCTTCCAAGGCACAGTTGCTGCAGATGCAAAAGGCTTTGAAATAAATTTCCAAACGGGGCCCTCTGATGGTGATGACATCGCTTTTCGCTACAACCCTCGCATTGGTGATTATACCTCCCTGAACAGCTTCAGAAACGGAAGCTGGGAGACGCAGGAAACTGCCCCTGATAAACCCTTCACCAGGGGAGGACACTTCCAAATTATTGTAGGCATCAACTCTGAGGGTTATcagGTCTTTGTGAATGGTTTAAGTCACTGCACGTTCAAGCACCGCATTCCTCTAGAGAAGGTTTCAACACTTGGTATTCGTGGAGATGTTTCCCAACTCATATGTGGTTTTATACATAACTGGAGTACTACTTCATTCTTTACGGAACTTCAGAAAATGACAATCACAGAGTGTTCATCCACAAGCTCGGAGTCCACACTTTTAGAGATTTCACATCCAATCAGCAACCCAGCACTTCCCTATGTGGGTGAAATACCAGGAGGGATTAAAGAAGACATGGCTGTATTCTTCCAAGGGTCTATTCCTTCAGAAGCCAAAGGctttgaaataaatttcaaaacGGGGCCGTCTGATGGTGATGACATCGCTTTTCACTACAACCCTCGCATTGGTGATTATACCTCCCTGAACAGCTTCAGAAACGGAAGCTGGGAGACGCAGGAAACTGCATCTGATAAACCCTTCACCAGGGGAGGAGCCTTCCAAATTATTATACCTATCAACTCTGAGGGTTATGAGGTCTATGTGAATGGCTTAAGGCGTTGTGTGTTTAAGCACCGCGTATCTTTAGAGCAAGTTTCAACACTTGGCATTCGTGGAGATGTTTTAATCTCGatgtgtgcttttatttatCAATGGAGTACTTCTtccatctttacagaaataaagaaaatccaAAGCACACAGTCCTCAACCTCGACAACCATCACTCTAGAGGTTTCACATCCAATCAGCAACCCTGCAATTCCCTATGTAGGAAAAATTCCAGTAGTGGTAAAGCAAGACATGGCTGTACTTTTTCAAGGGAATGTTCTTGAAAATGCCAATGGctttgaaataaatttcaaaacagGGCCATCTGATGGCGAAGACATCGCTTTTCGCTACAACCCTCGCATTGGTGATCATACCTCCCTGAACAGCTTCAGAAACGGAAGCTGGGAGACACAGGAAACTGCACCTGATAAACCCTTCACCAGGGGAGGAGCCTTCCAAATTATTGTTGTCTTTAAATCGGAGGGCTATGAGGTTTATGCGAATAACCTGAGCCACTGCACATTTAAACATCGCATTCCTTTAGAGAAAGTTTCTACAATTGCCATTCGTGGAGAAGTTACCATTCAGCTCATTGGTTTTGTTGAAaACTGGATGAGCCCataaattaaaatgagtaaaacacGTACATGCGGAGGAAGTTCCAGAGGCTGAAAAAATACAATCGAGTTTTGCAGcagtaattgtttatttaattattttatagatTTCAAAATTCTCTCTTTATATTGTTCAGTTTGCCTTTAATGTCACCACCTTGATATCATTATGCTTTGGACAAGCTATATAACTTGGGACCTGATGTGTCTCTACATTGGACATTTTACCCACCAGTCTGATCAACAGAAAAGCCAACATTTTAATCCACACTGCCTCAACTTCCTTGTGAAGTTTTGGcctcttaaagaaaaaaaatgtggcttTCAGACTTTCTTGTGAAATTATATAATGTTTTCACATGGTCATAAAATGATTTGCTATTTCCCATGTATGTAACATGTTTTCAACATTTATCCATGAAATgtcaggaaaacaaaaacagggaTAAAAGGGTAAAACTTTTCACCACATTCCaaagtttcatttcattcaattcatttatctttttaatcCATAATTGAAATACTTTTTGGATCAgatatttactttacttttttttggacAATCTACAAGTTTGCTGTGAGGCCTGCTTGGATACTTCTCTTATAAGAgagctgagacacacacacacacacacacacacacacacacacacacacacacacacacacatatatttgtCTATGCAAAAATGCAGAATGAAGTGATAAGGCCTTCCAGAAGATAGAAATTAGCTTCTGGGCTGATTTTTGTTGAAGGGAAGCTTGTCTAGCCAACAAGCTACACTGGAAAGGTATTGATGCATTTAAGCTTGCATTATGATTCTCTATTAGAGAGACTCAAAGGGGGGATTCAGGGAACATAAAGTATCTTTTCCTGTACTTGTCTTATGTGCTAAGGGGCAAACATAGGCTAATTAATACTTAGTCCTGTTTTAGATTAAAGAGAACCTTTTTGTGTAGTATGGTGAAAACAGCTTCTACATTTGTCAGGCCTTTTTCCTTCTTCTGACTCACTGCTTAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304982.1 True 2734 mRNA 0.41 15 27132129 27138338

Neighbor

gene id symbol gene type direction distance location
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding downstream 284166 26827024 ~ 26847963 (-)
rec114 rec114 coding downstream 440394 26667267 ~ 26691735 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 599994 26515521 ~ 26532135 (-)
zgc:158464 LOC108264397 coding downstream 667184 26324381 ~ 26464945 (-)
cd276 cd276 coding downstream 839522 26194050 ~ 26292607 (-)
LOC113526685 LOC108264058,LOC108263899 coding upstream 36929 27175267 ~ 27186037 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 55581 27193919 ~ 27202055 (-)
LOC113526686 LOC108264731,LOC108432714 coding upstream 65429 27203767 ~ 27297171 (-)
LOC113526860 LOC108443293,LOC108264217 coding upstream 160647 27298985 ~ 27303730 (-)
LOC113526781 LOC108264218 coding upstream 173623 27311961 ~ 27314800 (-)
G105842 NA non-coding downstream 2957 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 24558 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 256295 26875595 ~ 26875834 (-)
G105639 NA non-coding downstream 312412 26819466 ~ 26819717 (-)
G105634 LOC108263998 non-coding downstream 343273 26787940 ~ 26788856 (-)
LOC117597606 LOC108264746 non-coding upstream 5369 27143707 ~ 27144874 (-)
LOC113526487 LOC108264058 non-coding upstream 50004 27188342 ~ 27188792 (-)
G106193 NA non-coding upstream 640794 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 723502 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 806478 27944816 ~ 27945033 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 523790 26569085 ~ 26608339 (-)
G105376 NA other downstream 891124 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1583201 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2052617 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 2367968 24751653 ~ 24764161 (-)
si:dkey-151j17.4 NA other upstream 6550 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 2482461 29620799 ~ 29714001 (-)
G107525 NA other upstream 3205193 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3589706 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3647255 30785593 ~ 30849697 (-)

Expression


Co-expression Network