LOC113526685 (LOC108264058,LOC108263899)


Basic Information

Item Value
gene id LOC113526685
gene name LOC108264058,LOC108263899
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27175267 ~ 27186037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304984.1
GTGGGTAAAATCAGGGACAGGTTAAAACCAGAGATGGCTATATTTTTCCAAGGAGCTCTTCCTGCACATTCCAAAGAgTTTGAGATAAATTTCCAAACAGGGCAGTCTGATAGTGATGACATCGCTTTTCACTTCAACCCCCGCATTGGGCAATATGTCTACCTGAACAGCTTCAGAAATGGAAGTTGGGAGCAGGAGGAATGTGCCTCTGATGAGCTCTTTACTAAGGGAGCAGCCTTCTATATGTTTGTTGTCATCAGTTCAGAAGGCTATgagGTTTATGTGAATGGCTTGCAACACTGTATATTCAACCATCGCATTCCTCTAGAGAATGTTTCTGCAATTAGCATTTATGGAGATGTTACCATCCCCATCTATGGTTTCATTGATAACTGGAGCAAATCCTTTACCTTTACAGaccttttaaaaatcacaggCATGGGAAGCTCGAGCCTGTCACCCATCCTGTCAGAGGTTTCACATCCAGTCATCCATCCTGCACTTCCCTATGTGGGTACAATCAGAGGAGGGATAAGACCAGATATGGCTGTATTCTTTCAAGGCACTCTTCCTGCACATGCCAGAAGGTTTGCAATAAATTTCCAAACGGGGCAGACTGATAGTGATGACATCGCTTTCCACTTCAACCCCCGCATTGGTCAATATGTCTACCTGAATAGCTTCAGAAATGCATGCTGGGAGAAGGAGGAAACTGCACCTGATAAAGCCTTTACCAAGGGAGCAGCTTTCAATATGTTTGTCATCATCAATTCTGAAGGCTATGAGGTCTATGTGAATGGGGTGCGACTTTGTATATTTAAGCACCGCATTCCTTGGGAGAACATTTCTACACTTGCCATTTTTGGAGATGTTTCAGTCGCCATCTATGGTTTCATTGATTTCCATCAGAACTGGAGTAAATCACCTGTATGTATGGACCAAGCAAATGTCACAGGGCATAGGAGCCCATTCTCAAAACAATTATCCGTTCTGTCTGAGGTTTCACATCCAGTCATCCAGCCTGCATTACCCTACATGGGTATCATTAAAGAAGAGATAAGACCAGATGTGGCTGTTGTGTTCCACGGGGCAGTTTCTGAACATGGCAAAAGCTTTGAGATAAATCTTCTGACGGGTGACTCTTATTATGATGACATTGCTTTTCACATCAGTCCTCAAATTGGTAAATCTGTGGCCCTAAACAGCTTCATAAATGGCAAATGGGAGACTGAGGAATATGCCTCTGGGATTGTCTATGTGAACAGCTCGCAACACTGTACATTCAAACACCGAATTCCTTTGGAGAAAGTTTCTACGCTTGGCATTCGTGGAGATGTTACCATTAATTACTTTGGTTTTGTTGAAAATTGGAGCACATCGTCCATGGCTGGGAAAATTAATGAATTTCCAGACAAGTTGAGCATTTCTGAGAGCCTGATGCACATTCCATTAGAAATTTCACATCCAGTCATCAACCCTGAACTTCCATATGTAGGTTCAATCCCAGAAGGTTTAAGGACAGATATGGCTGTATTCTTTCAAGGGGCTTTTCCTGCAGATGCCAAAGAGTTTGCAATAAATTTCCAGACGGGTGAGTCTGATGGTGATGACATCGCTTTCCACATCAACCCCCAGATTGGTGATGTAGTGGCCCTAAACAGCTTTAGAAATGGTAGTTGGGAGACTGAGGAACATGCCTCTGTCACAGCCTTTGCCAAGGAAGAAGCTTTGAATATGTTCGTTGTCATCAACTCAGAGGGATATGAGATCTATGTGAATGGATTGCAACACTGTACATTCAAGCATCGCATTCCTTTAGAGAACGTTTCTACACTTGGTATTTTTGGAGATGTGATCATCAACTACTTTGGTTTTGTTGAAAACTGGAGTGACTCCTCCATggctgtgaaaatgaatgaaatccaaGACATGCCGATGACTTCCGGGAGCCTGACAGACATCCCATCAGAGATTTCACATCCTATAACCAACCCTGCAGTCCCATACGTAGGTGTAATCCCAGAAGGATTAAAGACAGATATGCCTGTATTCTTCCAAGTGGCTCTTCCTGAAGATGCCAATGATGCAGTGAACTTCAAAAGCATTCACCAAGGAAGTGAAAACTGGAGCGAATCGCCCATGGTTAcgaaaatgaatgaaatccaaGACATGTCACTAACTAACGGGAGCCTGATAGACGTCCCATCAGAGATTTCACATCCAATCAGCAGCCCTGAACTTCCATATGTAGGTTCAATCCCAGGAGGATTAAAGACAGATATGGCTGTAATCTTTCAAGGGGCTCTTCCAGCAGATGCCAAAGagtTTACAATAAATTTCCAGACGGGAGAGTCTGATGGTGATGACATCGCTTTCCACATCAACCCCCAGATTGGTGATTTAATGGTCCTAAACAGCTTTAGAAATGGTAGTTGGGAGACTGAGGAACATGCCTCTGTCACAGCCTTTGCCAAGGAAGCAACTTTGAATATGTTCATTGTCATCAACTCAGAGGGATATGAGATCTATGTGGATGGATTGCAACACTGTACATTCAGGCATCGCATTCCTTTAGAGAACGTTTCTACACTTGGTATATTTGGAGATTTGATCATCAATTACTTTGGTTTTGTTGAAAGGTGGAGTGACTCCTCCATggttgtgaaaatgaatgaaatccaaGACATGCCGATGACTTCCGGGAGCCTGACAGACATCCCATCAGAGATTTCACATCCTATAACCAACCCTGAACTTCCATATGTAGGTTCAATCCCAGGAGGATTAAAGACAGATATGGCTGTAATCTTTCAAGGGGCTCTTCCAGCAGATGCCAAAGagtTTACAATAAATTTCCAGACGGGTGAGTCTGATGGTGATGACATCGCTTTCCACATCAACCCCCAGATTGGTGATTTAATGGTCCTAAACAGCTTTAGAAATGGTAGTTGGGAGACTGAGGAACATGCCTCTGTCACAGCCTTTGCCAAGGAAGCAGCCTTGAATATGTTCATTGTCATCAACTCAGAGGGATATGAGATCTATGTGGACGGCTTGCAACACTGTACATTCAAGCATCGCATTCCTTTAGAGAATGTTTCTACACTTGGTATTTTTGGAGATGTGATCATCAACTACTTTGGTTTTATTGATAACTGGAGCAGATCTTCCTTGGCAGTGGAAAATAAGGAAATCACTGAAATAACAAGCACTTCTCTGACACTTCTACCCATCACATCAGACAAGCTTGCACTTCCATTTGTGGGCACCATCCCGGGCGGGATAAGAGCAGATATGGCTGTAATGTTTTATGGGACAGTTCTTGTAGATTCAAATGAgTTCGAAATAAATTTCCAAACATGCCAGTCCTCTGATGATATCGCTTTTAACATCAATCCCAAAATTGTCCGTGTTCTTGTGCAAAGCAGCCTCAGAAATGGCAGTTTGGAGAGTGAAGATTTTGCTTCAGACAAAGAAGCAGCCTTCAATATGTTTGTTGTCATCAAATTAGAGGGTTATGAGGTCTATGTGAATGGCCTGCAATATTGTGTGTTCACGCATCGCATTCCTTTAGAGACCATTTCTTCACTTGGCATTCGTGGAGATGTTTTCATCAATTTCATTGGTTTTATTGATAACTGGAGTAGCTCTTCCATTAAAATCACAGGCATGGAAAGATCATGCTGGAGACCGATACCAATCCCATCAGAGATTTCACATCCAGTCAGCAACCCTGCCCTTCCTTATGTAGGAGCAATCCCAGGAAAGGCAAGACCAGACATGGCTGTCTTGTTCCAAGGGGCTATTCCTGCAGATGCCAATGAGTTCACAATAAATTTCAAAATGGGTGGGTCTGATGGTGAGGACATCGCTTTTCACATTAACCCCCAACTTGGCCATCATGTGACATTAAACAGCTTCAGAAATGGGATCTGGGAGACTGAAGAATCTGCCTCTGACAAACCCTTCACCAAGGGAGCAGCCTTTAATATGTTTGTTGTCATTAAATCAGAGGGCTATGAGGTCTATGTGAATGGCTTGGAACTTTGCACATTCAAACACCGCATTCCTTTAGAGAACGTTTCTACGCTTGGCATTTGTGGAGATGTTTCCATCAATTTCATTGGATTTATTGAGctGTCCTTTTGCATCATTGTATGGACTAGCATTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264058

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304984.1 True 4173 mRNA 0.43 35 27175267 27186037

Neighbor

gene id symbol gene type direction distance location
LOC117597534 NA coding downstream 31672 27138247 ~ 27143595 (-)
LOC113526953 NA coding downstream 36929 27132129 ~ 27138338 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding downstream 327304 26827024 ~ 26847963 (-)
rec114 rec114 coding downstream 483532 26667267 ~ 26691735 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 643132 26515521 ~ 26532135 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 7882 27193919 ~ 27202055 (-)
LOC113526686 LOC108264731,LOC108432714 coding upstream 17730 27203767 ~ 27297171 (-)
LOC113526860 LOC108443293,LOC108264217 coding upstream 112948 27298985 ~ 27303730 (-)
LOC113526781 LOC108264218 coding upstream 125924 27311961 ~ 27314800 (-)
LOC113526458 chst1,LOC108432931 coding upstream 190800 27376837 ~ 27379548 (-)
LOC117597606 LOC108264746 non-coding downstream 30393 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 46095 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 67696 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 299433 26875595 ~ 26875834 (-)
G105639 NA non-coding downstream 355550 26819466 ~ 26819717 (-)
LOC113526487 LOC108264058 non-coding upstream 2305 27188342 ~ 27188792 (-)
G106193 NA non-coding upstream 593095 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 675803 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 758779 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 767481 27953518 ~ 27953990 (-)
si:dkey-151j17.4 NA other downstream 15168 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 566928 26569085 ~ 26608339 (-)
G105376 NA other downstream 934262 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1626339 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2095755 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 2434762 29620799 ~ 29714001 (-)
G107525 NA other upstream 3157494 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3542007 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3599556 30785593 ~ 30849697 (-)
G107803 NA other upstream 3630542 30816579 ~ 30820422 (-)

Expression


Co-expression Network