otogl (otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679)


Basic Information

Item Value
gene id otogl
gene name otogl,LOC107736094,LOC107686601,LOC107662850,LOC107600679
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27662408 ~ 27708771 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304991.1
GAGACTCCACCTATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGTTCAGGTGGAGACTCCACTCATGAGAGGGTGATTGAGGTTATTATGAATGACACTGTACCTGCGCTCAGGTAGAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGAATGACACTGTACCTGCGCTCAGGTAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGAGACTCCACCCATGAGAGGGTGATTGAGGTTATTATGATGGACGCTGTACCTGCGCTCAGGTAGAGAGAGCGGTTCCACTCTAGCTGAAGATGGGAATTGGCCGCGAGTCGCTCAGGATAAAAACGCATCCCAGCGCCTGACCCTGATTTAAACTCCGCGGCTTTTTAGTCTGCTCACTTAGAGCTGACGGCGGCTTTAGCAAAAAcctgagagagaggggaaaaagcaaagaaaaatgacttcataATTTTAACCTGTTTCCATACGGACGCTGCCCTGAGATGAACGAACAGCGGAAAGTGAAGCTGTTTTCTCTGTGGACGCTTTTCTTCCTCAGACTGGTCGTATTTCCAGGATTCCTTTGCCAGGtatcaaaaacagaaaataacttGAATAGGAGAGTTAATGCACTGCGCCAGAAACGAGATCTCTTCCGTGAGGAGGCCGTCAGTGCAGCGCTGTCTGACTCAGCTCTCCATCGAAGTGTCCTGCGTAATTATACAGCTCGAGATGCatctgcagAGTATTGCGGGTGTCTTAATGGCGGCTGGTGTCAGGAGGGGGGGCAGTGTGACTGTGCACAGTTCCAGGCTCTGGGAGACCGCTGTCAGATCaTTCCCAACCTCGGGCAGGACCGGGATGGGATTTGTCGCTCATGGGGTCAGCACCATTTTGAGACATTTGATGGAATGTACTACTACTTCCCTGGAACATGTTCATATATCTTGGCCAAAGACTGTCACTCAGCAGAGCCCCGGTATACTGTGTGGGTTCACAACAGTCGTTCATGTCGTGGCTCAGTGTACTCTTGTCCTCGTTCTCTCAGTCTCTTCTTTCCAAACGAGGAGGAGATCCACATTAGAGGCTACCGGGTGCTGAAGGGGGAACAGAGACTAAGTTTGCCCCAGACGGTTCATAATGTCTTTATCGAGCGACTTGCTGACTACATCCTGGTGAAGAGCACATTTGGCTTCTCTCTGGCCTGGGATGGAAGCTCCGGGGTCTACCTCAAAATGACAGAGGAGCACAAAGGCCGGCCTTGTGGCCTGTGCGGAAACTTCAATGATGACGGATCAGATGATCTCACCAGCAGCCACGGTATAAAATCGGAAGACGTTGCTGAGTTTGGGAACAGCTGGATTGTGGACCTTCCTCATGAGCCACGCTGTCCTTCTATAAATGATGACTTTCCTGGACCATGTTCATCTGAGTCTGAAATGGATGATGCCATTGAGAAGTGCAgtgctttgcttttctttccttttatctCCTGCCATGAGAACATAGATCCCAATCCATTTGTTGCCAGCTGTGTTTCGGATCTATGCGTCTCACATGATGAAGAAACGTTTTGCCGGACACTAGTCGAATACACCAGGGCCTGCTCCCATGTTGGTTATCCAGTCCGAGAATGGAGAGACAGCTTCCCTACATGTGCGGATGGATGTGAAGATAGCTTTGTCCATAGAGACTGTATCAGTTGCTGCCCCCCCACCTGCACTTTTGAAAAAGAATGTCTAGGCACCAACCTGCACTGCCTGGATGGATGCTACTGCCCCGATGGGTTGATTCTACAGAATGGAACTTGTATAGCGGTGTCTCAGTGTCCATGTGTATATCATGGCACAGCTTATCCTTTGGGTCATGTTCTGGAGCAAGGCTGTACTGTCTGTGTCTGCATGGGAGGAGTATGGAACTGCACTGAAAACAATTGCACTTCGGAGTGTACAGTGATGGGTGACACACATGTGACCACGTTTGATGGGCGCATTTATATGCATACGGGCAAATGCCAGTATGTACTAGTGAAGAGCCGTGGCAACACCAGGTTTACTGTCACAGTGCAATACGCAGCATGTGGAGAGTCTCAGGAAGATTCCTGTAGTCACTCAGTGACTCTTGTGGTGGATGAAGACGTAAGCAGGCAAGTCACCCTCAACAGAGAAGGAGAGGTCATTATTGGAGCGAGCATGATTGTCAGTCTACCTTACTCAGATGacGTAGTGGCTGTGCGCAGGCTGACATCTGTGTTCATGGGCCTGCGGGCTTCCTTTGGACTGAAGCTGCATTATGACTGGCGGGGTGGGCGAATCTACCTGCAGCTGGACAGCACATGGACAGGCCGCACCCTCGGACTCTGTGGAACACTTAATGGCAACCTGCGAGATGACTTCCTctctCCAGCTGGTATGATAGAAGGTACACCACAGCTGCATGCAAATGCATGGAAAGTGTCTTCAGCATGTATCAGCCCTGTTAACATCCCTATCATTGACCCCTGCGAGATGAACCAACAAAACGTATTCTATGCATCATTGTGTGATATTCTGACTGGAGACGTGTTTGCTGCATGCCATGCATACGTGAGTCCTGGTGTGTACTACCAGCAGTGCCGCTTTCAAGCCTGTCGGTGTGGCAGTGGCTGCCTGTGCACTGCGCTCGCCCATTACGCCTACGTCTGCTCCAAACACCACATCAACATCTACTTCAGAGCACATGTCTCTGAATGTGgcATGGTCTGTTTAGGGGGAATGATGTACCACCCTTGCACGACTTCATGTGGGAGAACATGCCAGTCAGTGAGTAGTGGtgaagtgtgtgatggagaCTGTGCTGAAGGATGTGGCTGCATGGATGAGATGTTCTATGATCACGCACGTCAGCGCTGTGTACCCCTATCTCAGTGTCACTGTTACTTCATGGGTTCAGTCTTTCAGCCAGGAGAAGTGTCCTTCAGCTCCTCTGGGCcttgTCTCTGCAGAAATGGTCGTATGGAGTGTGTGCCTGAAGAAAGagAGCCTGAGACAGATGATTGTCCAAATGGAAAAGTGTACTACAACTGCAGGGGTCCCCAGGGTGCAGGGCCATCTGgcgtgggcgtggcctgtgaaCTCACCTGTAGGAACCTAATGCTGAACCTTACGTGTCCTCCTATGACCCCCTGTGTGTCTGGATGTGGCTGTCCAGCAGGGTTGGTTGGTCATAATGGAGAGTGCTATTATCCAGAAAACTGTCCATGTGCCTGGCTTGGTCTGGAGTATCTTCCAGGAGAGACAGTGGATACGCCTTGTTACCGCTGtgtgtgtcaTCGTGGGTTCTTTAATTGCACATACTTTCCCTGTCCAGCTGTGTGCACTGTCTACAGTGACCGTCATTACTACACATTCGACGGCCTGGAATACGACTATGCTAGTGATTGCCAAGTTTACCTTATAAAGAGTGTAGGTGATACAGAGATTTCTATTACAGCTCAGAATAAAGACTGCTACGAGAGTGGAATAGTCTGCATGAAGACCCTGCTCATCTATGTTGGCCTCACTAAAATCTACTTCAATGATAACTCAGGCAGACCTAGCCCCTCTACTGTGGTTGGACGAGGGTACGAATTTGAGCTGTGGACCGCAGGCTACTACACTGTGGTCCATTTCCCCAACCATGACTTGACTGTACTGTGGGACAGAAAAACAACCATCCACATTCGTGCTGGGCCACGATGGAAGGGTCAGTTCAGTGGCATGTGTGGGAACTTTGACATGGTGACAGTGAATGACATGACCACAGCGGGGCACATGGAGGTCAGCAATGCTCAGGCTTTTGGAAACAGCTGGGCTCTTGGCCAGTGTGAGAGTGATTTTATAGTGCGCAGACCATGTGAAGGGGACCTGAGCAGACAGCCATACGCTAAGCGAGAGTGTGGCCTTCTCTACAGTGACGTTTTTGCTTCATGCCACAATGTGGTGGATGTGACCTGGTTTTATAAAAACTGCCTGACAGACACCTGCAACTGCAATCGAGGGGGCGACTGCGAGTGTTTGTGCACCAGCATTGCTGCGTACGCGCATAAGTGCTGCCAACACGGCGTCACGGTACACTGGAGATCTCCCACTGTCTGCCCATATGACTGTGAATACTACAACCAAGagctgGGTGAGGGTCCATTCACTTTGTCTGCCACTGAACTGAatgattcagtgtgtgtgtttggagcgAATGTCAGTAGTGGAGAGGTGTTTCCTCTGCCGAAGACTAGTGCTCAGCCAACTGCCATCTTCAACCTCATGATCACCAGTGGACTTTACAAGGACCGAGCTTCACGACTCCCCGTTGTCTCACTGGAGTCTGCCGAGCGCCCAAACTACTTCCTGTGTGTCACACCCAGTCGCGTTGTGCGCCTGGAGCGCTGGAGACCCGATGAGGACTTTCGTCGCCAGGCAACCTTCATTCATCACCAGGGCTTGTGGTTACCCGGGCGATCCTCCTTTGAGCTGCACAGCCAGAAGGGTGTCttcattacactcacacacacacatgcacgtgcACAGAGCTACGACAACTCATACTTTTTCAAGGCCAGCAGCAGTTTTACCATTGAGGAGAGCAGTTTTGTGATTCCTTATCGACTGATGTGTGAGTGGAAGTACCATGCATGTGCCAGCGCATGtgtaaaaacatgcagtgaTCCTGATGCCACACGCTGCCAGTTCTTGCCTCTggtggaAGGCTGTTTCCCCCGCTGTCCGAAAACCATGGTGCTGGATGAAGTCACGAGGAGGTGTGTGTACCTAGAAGACTGCATAACACTTTCACCAACTCCTACTCCTTACATGTTTGTGACTCGATCTAACAGAACCACCAGAGCTCCTACCACGATGATTCCGACAACTGTGACTACAGCCCCGACCACCACAACTACCATGACTGCTCCCACAACGACCACAACGACCACTCCTCCCACCACTGCAGGCACCACTAGCACGACTGCGGCTCCTACTTCAGCCCCCACCACGTCTACCTTTATTACAACAACTCTTGAAATTCTTACATCCTCTCCACCAATCACAGAAAGCCCTTTTGTTACCTCAACCATGCCCACCACTAAGCCAACCACACCACCTACAACTACCTCTGTTACCACTACATCACCGCCACCCACCACTACAGAGATCTTGACCACAACTGAGGAAACAACCACTTCCATCATCACTACCACAACTCCTTTCACCACTCATCCCATTACAACAACAACCCCTCTTATCACCACAGAGATGGCCCCTGTTTCCACGGTAACCGAGGAGGACTTTATTTTGACGTCGACAGCAGGAACACCCCCAGAGCCAACATCCACTGCCCCCTCCTTGTCTCCCACAACGCTCAGACCAACAACCACCCTTCCTGCATTCGTGATCCCCACTGGACCCTGCACGCCTCCATTCTCTGTGCGAGTTGATGAGTGCAGTGAGTACATTTGCTTTAATGGGCAGCTGATGCTATACAACTCCTCCCAGCACTGCAGATTCAACATCACCCAACCGCAGTGTAACCTACTGGGCATGCCCATTCAGATCAACACAGACCCCTGCTGTCCACTGTGGCGCTGTCCCTGCCGCTGCTCTATAATCTCAGACCTTCGTGTGATCACGTTTGACGGGAACAATGTTGCTCTGTATGATAACGGCTCCTATATACTGGTTCACCTGCCTCGAGAGCACATTGTTGGACATGTCGAGAAATGCCCCACCAGTGAGagtgTGAACTACATTAGACGACCTaCTCCTACAGGTGGAACCTCTGGCCTATGTTTTAAGAAGTTGAACATAACCACTCATGCCTACAGGATCATGATCAGTCGCCTTGACCGCAAGGTATCTGTGAACCAGATCACAGCTCGGCTGCCATTCACCAGATTAAACCTGCATATCGATGACACAGGGACCATGTACATCATTCACACCCCCAGTGGAATCAGTATCCAGTGGTACCACAGCACCGGCATCATGGTCCTACAGTACGGCGCCCCTGATAACACCTCCACCAGAGGCCTCTgcgGCTGCTGTGACGGTAACCCAGCAGATGACTTACGTTTGCCCAACGGGACTGTGATGCGAAACGTGGAGGACATCCCTGTGTTTCTTCACAGCTGGATGGTGGACACATCCGAGGAGACGGATTACTTCCGGAGAGTGGGAGACAACTGCACCACGGGaaactgcacaaaatgttttcaaatgctCAACCAGAGCCCCTTCTCCAAGTGTCACCACAAGgTTTCACCAGAGCAGTTCTGTGACAAAATCTGGGCAGGTGACCTACACTACAAGGAGCACGAGTGTGACTTTCTTGCTGCTTATGTGGCCATCTGTTACACTCACCAGATCTGCTTCAGCTGGAGGACAAGCAACTTCTGCCCTCTGAAATGTCCTCCTGGTAAAGAATATAAGCCATGTGTGAACACATGCAAGACGATGACGTGTCAGAATCGAGATTATTATGAGGAAAGCACCTGTTCCTCCATTCGAGAGGAGTGTGTATGTAAGAGTGGTACCATCCTGCACCGAGCCGACTCCGCATACTGTGTCACTGAGGACCAATGTGTGTGTACGGATAACGATGGTTCGCCGCGGGCCCCAGGGGAGGTGTGGAATGGTTCTCTGCGAGGCTGCTGTCTGTTCACCTGCCTGGAGAATGGCAGTGTCGTCCCGGTGGAGCCCGAGTGTCCTCCTGAGCCTGCCCCTCTGTGTGAGCGTGAGGGCGAATACTACATCGATGTGCTGGAAGAGGGTGCTTGCTGCCCAAAAAAGATTTgcgAGTGTAACATAACCATTTGCCAGAATGACATTCCTTCCTGTGGGATTGGGAACAAGCTGGTGATTGGCTATAGCACCCTCTCCTGCTGTCCCGAATATCGATGTGAATGTGATCCACTGTCCTGTCCCAGTGTCCCAATGCCAGAATGCAAAGAGGACCAGTTCTTGGTGGAGGTCAGAGGGCAGCATGCCTGCTGCTATAACTATCTATGTGTGTGTGAGTCTTGTATGGAGCCCATCCCAGTATGTCTGCCTGGAGAGATTCTGGTTGTGGATATGAACACTACTCATCATTGCTGCCCCCATTATCGCTGTGtgtgtgatgtgagccTGTGTCCTGAGCCCAGCATTAGCTGTGTTACTGGTACTGCACTTGTTAAGACGCCTGTACCTGGCAGCTGCTGTCCAGACATTCACTGTGagtgtcagtgtgacaGTATTGCACGGCCTCAGTGCACTGTGGGAGAAATTCAAGTGGAGGAGCCAGATCACAGCAGTACCTGTGGCTGCATTCAGTACTTGTGCaAGAAGGCAGATGTATGTTTATTTCAGGGAGTGACTGTGCTGAGTCCAGGCCAGTCCATGGTGCAGTACGTTGAAGGAGAGCTGTGCTATACTGTGCAGTGcctcacacacagagacccCAGCACCGGTTTCTATGCCATGGATGTGACCACTTCAAACTGCTCTGAAAAGTGTGAGCCTCACCAGGTGTATGTCCCGTCCTCTGACCCGCATGTGTGTTGTGGCTCGTGTAAAAACGTCTCATGTTCATTTACCAGTGAGAACGGAACTACAGAAGTATTTACGGCAGGTAGCTCTTGGGTGTCTAATTGCACACGTTTCGACTGCATTGAGACAGCGGTGGGAGCGGTGATTCTCGCCTCTGGAGTCGTCTGCCCTCCGTTCAATGACACAGAGTGTATTCAGAATGGTGGTGTGGTGCAGACCTACGTTGATGGCTGCTGCAAGACATGTAAAGAGGATGGTAAAACATGCAAAAGAGTTGCCATCAGGACCACTATCAGGAAAGATGACTGCAGAAGTAATGCACCAgtaACAGTATACTCCTGTGATGGGAAGTGTCCTTCTGCCACCATATTTAACTTCAACATAAACAGCCATGCACGTTTTTGCAAGTGCTGTCGTGAAAATGGCCTACAGAACCGCGTCATCCAGCTGTACTGCACTCGCAATGCTACTTCTGTGGAATACAACTTCCAGGAGCCGATGGACTGCTCATGCCAGTGGAACTAATAACTGATACCAGTTTGTAGATGTGCAGTACCTTGGCATTTTCATCTCTATATACCCTCTCAGTGGACGTGCTCAGTTAATACCACACAGATCAGTACAACCACAAACTACTAActccatatttatatatatattttaaattctgaatTAACAATCTTGGGAATATTACATAATCACGTAGTCAGTAGATGAATGTATGACTAATAATCAGTCAGCTTATATATGtcaatatataaggaataataaaagaaataatgtaTGTGCCCAAGTACAGGTTATTAATATCAATATATCATGCAGTTTTGTTtctcaaaaatattttgaagCAAAATTGATTCTTGCACCTTGCATGTAATTAAGTAACCTAGGTAAGTCAGTAGTATTTTAGATGCcttttcagatttttgtatcttttttaacctcttgttttatttaagaaataactGTACTTTTTGAACAATTTGCcatcaacattttttaaaaaacacttaaacCCCCTACagggataaataaataagccagATTTGTGAAAGTCTGAATTCTATTAAACTGAAAA

Function

symbol description
otogl Predicted to enable alpha-L-arabinofuranosidase activity. Acts upstream of or within otolith morphogenesis; semicircular canal morphogenesis; and sensory perception of sound. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in inner ear; macula utricle; and otolith. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 84B. Orthologous to human OTOGL (otogelin like).

NR:

description
PREDICTED: otogelin-like protein

GO: NA

KEGG:

id description
K25030 OTOG, OTOGL; otogelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304991.1 True 8787 mRNA 0.49 57 27662408 27708771

Neighbor

gene id symbol gene type direction distance location
ptprq ptprq,LOC108413201,LOC107705767 coding downstream 3571 27602226 ~ 27658837 (-)
wash1 wash1,LOC103045331,LOC107686618,LOC107564895 coding downstream 104438 27546497 ~ 27557970 (-)
fkbp4 fkbp4,LOC107686573,LOC107705800 coding downstream 137892 27515680 ~ 27524516 (-)
LOC113526458 chst1,LOC108432931 coding downstream 282860 27376837 ~ 27379548 (-)
LOC113526781 LOC108264218 coding downstream 347608 27311961 ~ 27314800 (-)
si:ch73-386h18.1 zfhx3,LOC108264658 coding upstream 25568 27734339 ~ 27768803 (-)
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC105906547 coding upstream 73050 27781821 ~ 27823226 (-)
wdr59 wdr59,LOC107686576 coding upstream 116553 27825324 ~ 27846822 (-)
cog8 cog8,LOC107686577,LOC107573089,LOC107600188 coding upstream 146065 27854836 ~ 27859361 (-)
zdhhc7 zdhhc7,LOC108435925,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043 coding upstream 156338 27865109 ~ 27878619 (-)
LOC113526487 LOC108264058 non-coding downstream 473616 27188342 ~ 27188792 (-)
LOC117597606 LOC108264746 non-coding downstream 517534 27143707 ~ 27144874 (-)
G105842 NA non-coding downstream 533236 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 554837 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 786574 26875595 ~ 26875834 (-)
G106193 NA non-coding upstream 70361 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 153069 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 236045 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 244747 27953518 ~ 27953990 (-)
G106260 NA non-coding upstream 245493 27954264 ~ 27954479 (-)
si:dkey-151j17.4 NA other downstream 502309 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 1054069 26569085 ~ 26608339 (-)
G105376 NA other downstream 1421403 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 2113480 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2582896 25043786 ~ 25079512 (-)
hipk3b hipk3,LOC108264637 other upstream 1912028 29620799 ~ 29714001 (-)
G107525 NA other upstream 2634760 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3019273 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3076822 30785593 ~ 30849697 (-)
G107803 NA other upstream 3107808 30816579 ~ 30820422 (-)

Expression


Co-expression Network