LOC113526678


Basic Information

Item Value
gene id LOC113526678
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30714118 ~ 30715453 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402799.2
ttcagcagccaatcagtgacagccgtgtcagGAATGAtgggtgaagtgtgtgtttaatcctgGCCTGGTGTGTTAAGGGAAACTCCATGTCTCAGTGCAGGAAacctctccctcacacacacatAGGTCACTGAAGTTATTTACGGCGTGAATCACGCTGGCGGCGTCCCCGAGGCCGTGTCTGTGCGTCGCACCGTCTGAAAAGTAGGCCGAGCTTCAGTGCTGAATGTGACACATCAGAGGTGTGGAAgcagtttaacacatttaacatcTCTTAACGATTTATAAACTGTAATCCTACGATAACGatctataaactgtaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402799.2 True 325 lncRNA 0.47 3 30714118 30715453

Neighbor

gene id symbol gene type direction distance location
caps2 caps2 coding downstream 3395 30700440 ~ 30710723 (-)
cd9a cd9 coding downstream 88785 30614083 ~ 30625333 (-)
si:dkey-88e18.8 LOC108264158 coding downstream 104911 30604089 ~ 30609207 (-)
cfap161 cfap161 coding downstream 116374 30592721 ~ 30597744 (-)
utp15 utp15,LOC107559694,LOC107600050,LOC107735583 coding downstream 139443 30565402 ~ 30574675 (-)
si:dkey-30c15.10 LOC108264154 coding upstream 25014 30740467 ~ 30755090 (-)
pdp2 pdp2,LOC108423909 coding upstream 40996 30756449 ~ 30760179 (-)
si:dkey-30c15.2 LOC108264169 coding upstream 77487 30792940 ~ 30804496 (-)
LOC113524884 LOC108264165 coding upstream 134951 30850404 ~ 30857147 (-)
ppp1r37 ppp1r37 coding upstream 142476 30857929 ~ 30898090 (-)
G107550 NA non-coding downstream 244215 30443523 ~ 30469903 (-)
G107574 NA non-coding downstream 290780 30421252 ~ 30423338 (-)
G107536 NA non-coding downstream 307154 30368887 ~ 30406964 (-)
G107532 NA non-coding downstream 322660 30363627 ~ 30391458 (-)
G107533 NA non-coding downstream 344930 30368338 ~ 30369188 (-)
G107800 NA non-coding upstream 95594 30811047 ~ 30826087 (-)
G107804 NA non-coding upstream 105256 30820709 ~ 30822357 (-)
G107805 NA non-coding upstream 112698 30828151 ~ 30829653 (-)
G107806 NA non-coding upstream 120181 30835634 ~ 30884613 (-)
LOC117597590 NA non-coding upstream 185112 30900565 ~ 30908021 (-)
G107525 NA other downstream 369242 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1000117 29620799 ~ 29714001 (-)
si:dkey-151j17.4 NA other downstream 3554019 27144888 ~ 27160099 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 4105779 26569085 ~ 26608339 (-)
G105376 NA other downstream 4473113 26239330 ~ 26241005 (-)
bbs10 bbs10 other upstream 12591 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 70140 30785593 ~ 30849697 (-)
G107803 NA other upstream 101126 30816579 ~ 30820422 (-)
LOC113524890 LOC108264167 other upstream 203731 30919184 ~ 30989204 (-)

Expression


Co-expression Network