LOC113527011


Basic Information

Item Value
gene id LOC113527011
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19350762 ~ 19350943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402833.1
CTCAAGTCAAGAGggtgtttctgaaaaaaaagaaaatcttttgtTGTCTATTCAATATCTGATACGTTCTCTATTTGAGGACTCTATATGAAATGGATTTTTAGAGCTGGAAGAGGGGCTTGCTCCATCCACGCCACACATCAACCTGGTATTACAGTACCTCCACGAATAGTGCAccttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402833.1 True 182 ncRNA 0.40 1 19350762 19350943

Neighbor

gene id symbol gene type direction distance location
dhx34 dhx34 coding downstream 17332 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 609038 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 826536 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1625442 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1872477 17422361 ~ 17478285 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 56107 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 700389 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 864199 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 1011387 20362330 ~ 20377332 (-)
ccnp NA coding upstream 1031867 20382810 ~ 20389633 (-)
G101846 NA non-coding downstream 51400 19298891 ~ 19299362 (-)
G101809 NA non-coding downstream 97399 19252853 ~ 19253363 (-)
G101805 NA non-coding downstream 109613 19240171 ~ 19241149 (-)
G101750 NA non-coding downstream 223403 19126638 ~ 19127359 (-)
G101749 NA non-coding downstream 225322 19123917 ~ 19125440 (-)
G101865 NA non-coding upstream 9849 19360792 ~ 19361008 (-)
LOC113526920 NA non-coding upstream 11629 19362572 ~ 19363809 (-)
G101932 NA non-coding upstream 44128 19395071 ~ 19395304 (-)
G101938 NA non-coding upstream 139586 19490529 ~ 19491255 (-)
G101939 ciapin1 non-coding upstream 149394 19500337 ~ 19583769 (-)
G101178 NA other downstream 1153956 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3993199 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5003754 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5788188 13550680 ~ 13562574 (-)
G98770 NA other downstream 6298451 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 629126 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1044923 20395866 ~ 20416574 (-)
G102566 NA other upstream 1602659 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1644398 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2880505 22231448 ~ 22306769 (-)

Expression


Co-expression Network