LOC117597583


Basic Information

Item Value
gene id LOC117597583
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25192057 ~ 25214790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578344.1
gaaagggaagagCTTAGAGCTGTACTGAGAGGGAAAGAAGAGACagaccaaacaggaagtgaaaaggagaaaagaagacTTTGGTAGGATCTAAAGGAATTATATGCCAGGAGTGCTAACCAGAATCCTCCTTCTTTTCTAGAAGAAATGACATAAAGAGCAATTTTTTGCCTGCAACCACCGTCATTCTCCTGCTCCACTGTACCTCCGTCGGACCTAGAACTTTGCTGAACCCCTGATGCTTGGATACATCTATCATTTACCTGTACTCCTGGAAGTTTCTGAATCAATAGAGGAAAAGAAACAGGAAGAAGCATGAACTCTTTTTTTGAATCTGCAAACTTGAACCATTCTTAAGGTATGAAGACTCTAAGGGGGTTGTACCTGTAGCGCACAAAGGGATGTACGCAGGTTTGCTTGATAAAGTCATAGCCATAAAGATGATGGGGACAACAAGAAAATGAGATTCACTTTAAGTGACTTAAATGAAAGAATCATGCAGATTGGCATGTTGGAAGACAACCACATGCTGTCCGATGCCTCATAACACAGGCAAACACATAAAGAAGACAATATTTTAGCATCTCTGCAAGACCAAACTAACTACTCCACAAGGTTTGGCTAAATCCTCAGAACAATCCCTTTCCCTGATCTTATGACAGACTACAAGTTTTAGGAACCTGTCAGAAGCCTGTTGTGTGGGAACGAGAACGAAAAGAAGACCTCCAAGACATcgtggagaagaagaagaggaagaagtaAAGAACCAGGAGAAAGGGACAGACAGCCAGAACTGGCTGTGGCAGGAACAAGGGAGCAGGGGGAAAGGGTAAAGGAGAGATGGGACTTCAGGGGCATTTGTGAAGGCTTGAAACAATGGAAGCAGCTCCGAAATAAAAAGCAGAACAGGGAGTCCCTGCAGTCCGCCTGGTACAATGTGTGCAGGTGTGGTGCCCCCTGGAGGTGGAAATCACTGATGATAAACATGCTCCCCCATGGCCTTGCTCACACGTGCCGGGCCATCGAGGAGGAGCAGGACAACGACAGAGAGGAGAGGATCTTGGCTATCCTGGGAATAGTTGGCACCATTCTCAACCTGCTGGTGGTCATCTTTGTCTACATCTACACCACCATCTGAAGACTGGAGTGGGACACGAAAAGCCATCCAGAGATTTGAGAAGGAAGGAAATCAGACTGGAAAGATTCAGTTTGTGTATACACTCAGTGAGGACAGGAGAAGATGAGAAGAATGGACTAATGGACTACTTCATTTGCCAAAAAATGTGTATTCACAATCATCATTTATGCAAAGTAAATCTGAATAGTGTCCACCATTTTCACCATTAATTTCAAAAGACCCCAATTTAAACTCTCATTATTAcctttaaatgctttacctACTAAGTTATGCTGTAAAtatttgaccatggcatggcaTCCTAGTATATTTCTCATGGCATGGCATTCTAATATATTTCTTATGCAACTGATTTAACATTTTAGAGACGGTTAAGTGTTCGCCAGCTTTAACGACAACCCTTTCAACACGAAGCACTGCAGATAATGGAGGCATCTGCTCAGGAGACAGCTGCAACACTTGCTGGATGTCTTACTTTGAGCAAATCTGGTGAAAGGAGGGACATTTCCCTGAAATATGCAAACAGGACAGCATACGTTGGCTCCATCTGCAATACTAAAGGAATAAATCTCAACATGTACTTTATACTTAATGAGCTTTTCTCAATTAACAAAGTTGACAAAACATGATATTGAGATTCCTATATGGAAGACATGCTAAGAGGCAAACTTAGCTTCTTTGGTTTACAGTATATGGTTATTCCTATGCCTAAGCAGGATCTGTAGATGTGTTCATGCTTTGCATCATTCAATGGGCagaaaagtggattattttggatgttCTGTTTCACATGGCTTTTCTATAGCTTTATCAAACCATTAAAATGGAGGTAAAGTTTGCACGGTATTATAAGCACCTAAAGCAAAACGGAATGGAATAAAGTTACAAAGAATTGCAAA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578344.1 True 2037 lncRNA 0.42 2 25192057 25214790

Neighbor

gene id symbol gene type direction distance location
rasgrp4 LOC108264291,LOC108428524 coding downstream 9950 25155182 ~ 25182107 (-)
ppp1r13l ppp1r13l coding downstream 56801 25106429 ~ 25135256 (-)
bckdha bckdha,LOC107560150,LOC107758241,LOC107662140 coding downstream 157175 25024817 ~ 25034882 (-)
siae siae coding downstream 415275 24767575 ~ 24776782 (-)
znf296 LOC108264426 coding downstream 441460 24739091 ~ 24750597 (-)
LOC117597607 NA coding upstream 80668 25295458 ~ 25301413 (-)
LOC113526534 NA coding upstream 89946 25304736 ~ 25319693 (-)
LOC113526369 LOC108264860 coding upstream 129435 25344225 ~ 25346964 (-)
LOC113526366 LOC108264060,LOC108430275 coding upstream 624680 25839470 ~ 25870271 (-)
loxl1 loxl1,LOC108264774,LOC108430572,LOC107599768,LOC107740351,LOC107656970,LOC107722288,LOC107569907 coding upstream 675509 25890299 ~ 25905340 (-)
G104694 hnrnpul1 non-coding downstream 40901 25113977 ~ 25151156 (-)
G104320 NA non-coding downstream 657638 24533737 ~ 24534419 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding downstream 727479 24414900 ~ 24464578 (-)
G103820 NA non-coding downstream 1616378 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 1678729 23512157 ~ 23513328 (-)
G104747 NA non-coding upstream 24320 25239110 ~ 25241770 (-)
G104750 NA non-coding upstream 28682 25243472 ~ 25245244 (-)
G105092 NA non-coding upstream 618489 25833279 ~ 25836038 (-)
G105219 NA non-coding upstream 872690 26087480 ~ 26087695 (-)
G105379 NA non-coding upstream 1105242 26320032 ~ 26320770 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 112545 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 427896 24751653 ~ 24764161 (-)
G104473 map3k10 other downstream 480689 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other downstream 530079 24631639 ~ 24661978 (-)
sipa1l3 sipa1l3 other downstream 617382 24480302 ~ 24574675 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other upstream 170535 25385325 ~ 25548928 (-)
G105376 NA other upstream 1024540 26239330 ~ 26241005 (-)
LOC113526510 LOC108264700,LOC108261657 other upstream 1354295 26569085 ~ 26608339 (-)
si:dkey-151j17.4 NA other upstream 1930098 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 4406009 29620799 ~ 29714001 (-)

Expression


Co-expression Network