LOC117597590


Basic Information

Item Value
gene id LOC117597590
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30900565 ~ 30908021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578353.1
CTGGTGGTAcgaggaggaaagaaagacaaaacagaTGGTGTGGAGGACTGGGGGCAGACGAGCACAGGTGGACTGGATGGACAGACGGagaagaagaggatgaagaggagtaGGAGAAGGAAAATggagcctctctctctctctctctctctctctctctctctctctctctctgtccttctgaaAGGACGTGGCAGAGGAACAGAAGGCTCTTTGGCCGGTCCTCGTCAATCCCCACACACAGGTGCTCAGTGACAGAGTGGATCTGCGTACGGCGTTTATCTCTCCCCGGGTTCTCGCTGCTGTACGGAGGAGAAACACTCGTCTGATTGGAAAACCGTGTGAGCATGTGGAAGCCATCAGAGCACGGCCGGCCCGGCACTCCTCCCTCCCCGTCCCATCACCCCCATGCTGTCTGCGGCCCGCAGCTTCCTGTTTCCTGCCCTCAGAAAACAAACGAGGGGAGAAGggagaaaaaaggggaaagaaGGGAAAGAAGGGAAAGAAGGGAAAGAAGGGAGTCCTGATTCTGCAGATTAATGTGCCACAAACTGGTGACTTCCTACAAGCAGTTTTCTCACAGCAACGCCTGGCACCAGGATACAGATAAAtctgtcaaaaataaaacagcagTGAACTGATAAAACACCAAGCTCCCTGATGCAGGAGATAAATTCCAGAGCTCGGCTCTTCATTCGGCCGAGTGGATCTCCTGAggagaacaaaacagaaacgGCGTAACAGAGAAAATCTCCCTCACGACAGGATCGAGCTCGGATCCTGTGAAATAAATCAGACAGGAACGCTGATGGACTGTGGGATTTACTCTGGGAAATCCTCGGCCCACCTGACAGGAAGTTCACGCAGACCTGCAACTTCCTGTGGAGCCAAATAAGGAATTTCCACACCTGAGTCACTCTGATGATGTTCCCCTGGAGGTTTCCATCGCGCTCCTGAACCTCGACCTCGACCTCGCCGTCTCTCTCGTCTTCCTCATTTCTTTGCTCACGCCTTTCTCTCTGaagaacacagaacacagaaactGCAGAAACTCGACTCTAGAACCGAAAGTTCTAACGTGGAGAATTAATTCTAATAAGAGGTGAATTCAGGTTATTCCTTCCTGTTCAACTGCTTGTaaggttttaataaaatgtttactgcACAATATCACAACTaataactgaattattatttattttcacgtaACAGAGCTCCAGTTATGTAGCAACATAAAGACTAATACAGAGTGAATAAAGCTTCTCTAATCATCTAATTTGagctctattttaaaaaaataataacaatgttaATTAACTCTTTATGCTTTGTTCCTTAAAACAAAGTGTTATCCGTTtttctattttcagttttatcTGAGTCTCTTTTTATTGTACGGAAGTTAAATTTAATCAGAAAGGATGCAGCCTCTCTGGGCAGAAACGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578353.1 True 1446 lncRNA 0.46 3 30900565 30908021

Neighbor

gene id symbol gene type direction distance location
ppp1r37 ppp1r37 coding downstream 2475 30857929 ~ 30898090 (-)
LOC113524884 LOC108264165 coding downstream 43418 30850404 ~ 30857147 (-)
si:dkey-30c15.2 LOC108264169 coding downstream 96069 30792940 ~ 30804496 (-)
pdp2 pdp2,LOC108423909 coding downstream 140386 30756449 ~ 30760179 (-)
si:dkey-30c15.10 LOC108264154 coding downstream 145475 30740467 ~ 30755090 (-)
gemin7 gemin7 coding upstream 53342 30961363 ~ 30967129 (-)
LOC113524886 arhgap42,LOC108264155,LOC108429891 coding upstream 79234 30987255 ~ 31068479 (-)
cntn5 cntn5,LOC107691883 coding upstream 199669 31107690 ~ 31236932 (-)
G107806 NA non-coding downstream 15952 30835634 ~ 30884613 (-)
G107805 NA non-coding downstream 70912 30828151 ~ 30829653 (-)
G107800 NA non-coding downstream 74478 30811047 ~ 30826087 (-)
G107804 NA non-coding downstream 78208 30820709 ~ 30822357 (-)
LOC113526678 NA non-coding downstream 185112 30714118 ~ 30715453 (-)
LOC117597523 NA non-coding upstream 88252 30996273 ~ 30999390 (-)
G107967 NA non-coding upstream 365191 31273212 ~ 31273477 (-)
selenot1b LOC108264179,LOC108429894 other downstream 50868 30785593 ~ 30849697 (-)
G107803 NA other downstream 80143 30816579 ~ 30820422 (-)
bbs10 bbs10 other downstream 168506 30728044 ~ 30732059 (-)
G107525 NA other downstream 555689 30343531 ~ 30344876 (-)
hipk3b hipk3,LOC108264637 other downstream 1186564 29620799 ~ 29714001 (-)
LOC113524890 LOC108264167 other upstream 11163 30919184 ~ 30989204 (-)

Expression


Co-expression Network