LOC117597606 (LOC108264746)


Basic Information

Item Value
gene id LOC117597606
gene name LOC108264746
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27143707 ~ 27144874 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578372.1
GCCCTCTGATGGTGAAGACATCGCTTTTCACTACAGCCCTCGCTTTGGTGATCATACCACCCTGAACAGCTTCAGAAACGGAAGCTGGGAGAAGCAGGAAACTGCCCCTGATAAACCCTTCACCAGGGGAGGAGCCTTCATAATTCTTGTAGTCATCAACTCTGAGGGCTATGAGGTCTATGTGAACGGTTTAAGACATTGCACATTCAAGCACCGCATTCCTCTAGAGAAAGTGTCTGCAGTTAACGTTTGGGGAAATGTTTCCCTCCTCGTCTGTGGCTTTATTGAAAGCTGGAGCACTACTTCATCCTTTAGAGAGCTAAAGAAAATCACAAGCACACAGAGCGCCACCTCGAGTTTGACGTCCTTGCCTTTAGAGATTTCACATCCTGTCACTAACCCTGCACTTCCCTATGTGGGTAAAATCCCAGGAGGGTTAAAACAAGACACAGCTATATTCTTACAAGGGACTGTTCTTGCAGATGCAAAGAGGTTTGCAATAAATTTCAAAACGGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264746 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578372.1 True 516 lncRNA 0.46 5 27143707 27144874

Neighbor

gene id symbol gene type direction distance location
LOC117597534 NA coding downstream 112 27138247 ~ 27143595 (-)
LOC113526953 NA coding downstream 5369 27132129 ~ 27138338 (-)
pkma LOC108432067,LOC103044212,LOC108264538,LOC107712845,LOC107595343,LOC107665073,LOC107668482 coding downstream 295744 26827024 ~ 26847963 (-)
rec114 rec114 coding downstream 451972 26667267 ~ 26691735 (-)
ube2q1 LOC105015542,LOC106562136,LOC108431153,LOC107696278,LOC107661444 coding downstream 611572 26515521 ~ 26532135 (-)
LOC113526685 LOC108264058,LOC108263899 coding upstream 30393 27175267 ~ 27186037 (-)
LOC113526349 lgals4,LOC108442553 coding upstream 49045 27193919 ~ 27202055 (-)
LOC113526686 LOC108264731,LOC108432714 coding upstream 58893 27203767 ~ 27297171 (-)
LOC113526860 LOC108443293,LOC108264217 coding upstream 154111 27298985 ~ 27303730 (-)
LOC113526781 LOC108264218 coding upstream 167087 27311961 ~ 27314800 (-)
G105842 NA non-coding downstream 14535 27123277 ~ 27129172 (-)
G105835 LOC108264191,LOC108436995,LOC101161623 non-coding downstream 36136 27105368 ~ 27107571 (-)
G105666 NA non-coding downstream 267873 26875595 ~ 26875834 (-)
G105639 NA non-coding downstream 323990 26819466 ~ 26819717 (-)
G105634 LOC108263998 non-coding downstream 354851 26787940 ~ 26788856 (-)
LOC113526487 LOC108264058 non-coding upstream 43468 27188342 ~ 27188792 (-)
G106193 NA non-coding upstream 634258 27779132 ~ 27781800 (-)
G106195 NA non-coding upstream 716966 27861840 ~ 27905029 (-)
G106258 NA non-coding upstream 799942 27944816 ~ 27945033 (-)
G106259 LOC108263905 non-coding upstream 808644 27953518 ~ 27953990 (-)
LOC113526510 LOC108264700,LOC108261657 other downstream 535368 26569085 ~ 26608339 (-)
G105376 NA other downstream 902702 26239330 ~ 26241005 (-)
si:cabz01090165.1 zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 other downstream 1594779 25385325 ~ 25548928 (-)
tmem91 tmem91,LOC107676753,LOC107757682,LOC107758240 other downstream 2064195 25043786 ~ 25079512 (-)
clasrp clasrp,LOC107758246,LOC107662138 other downstream 2379546 24751653 ~ 24764161 (-)
si:dkey-151j17.4 NA other upstream 14 27144888 ~ 27160099 (-)
hipk3b hipk3,LOC108264637 other upstream 2475925 29620799 ~ 29714001 (-)
G107525 NA other upstream 3198657 30343531 ~ 30344876 (-)
bbs10 bbs10 other upstream 3583170 30728044 ~ 30732059 (-)
selenot1b LOC108264179,LOC108429894 other upstream 3640719 30785593 ~ 30849697 (-)

Expression


Co-expression Network