wnt5a (wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813)


Basic Information

Item Value
gene id wnt5a
gene name wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20455304 ~ 20467426 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925728.2
GTGTGTCGCAGTCGTGTCTCCTGAAACACAGCAGGATCTGCTGGGAAATCGTACATGGGAACTTGGGAGCGCGAGAAGACGCGTTCCCCCGCGCCATCCTTGCGTACTTGTGAATTTATGTGTCGCAGCACTTAGAGGTCGGACCTGCGAGCTCCTGCTCCTTCACCACGCTGTGGATTGCAGCTGGTTCGAGCTCACACACTACTTGAGGAAGTCGGATAAATATAAGCGGGATTTGCTTTGGAATTTGCATTCCAAATCCATCAATTCCAAGAGGCTCCTCCAGCACGAACCACTTCACTAGCTGCTCTTTGGGGATGCTCTTCATGAACAGGCCATCTTCCTCAGGCTGGGTCAGAGCCATGGACACGCGACATGGAGTGGTTGCCATCACTTTTCTGGCCTTCTTCATGCAAGTGGTGGTGGAGGCTACCTCATGGTGGTCTCTGGCTATGAATCCACTGCTGATTCCCGAGGCTTACATCATAGGCGCACAGCCGCTGTGCAGTCAGTTGGCAGGCTTGTCCAAAGGCCAGAAGAAGCTGTGCCAGCTGTACCAGGACCACATGCAGTACATCGGCGAGGGCGCCAAGACGGGAATCCGCGAGTGCCAGTACCAGTTCCGCCACCGACGCTGGAACTGCAGCACAGTGGATAATTCCTCAGTGTTTGGCCGTGTCATGCAGATCGGAAGCCGTGAGGCAGCGTTTACCTACGCGATCAGCGCAGCGGGTGTTGTGAACGCAGTGAGTCGAGCGTGCAGGGAGGGCGAGTTATCGAGCTGTGGCTGCAGCAGGGCGGCTCGGCCCAAAGATCTGCCCCGAGACTGGCTCTGGGGAGGTTGTGGAGACAACCTCAACTACGGCTACCGCTTCAGCAAGGAGTTTGTGGACGCCCGTGAACGGGAAAAGACCTATGAAAAAGCCTCGATGGAGAGCGCACGGCTCTTGATGAATCTCCATAACAACGAAGCAGGACGGAGGATGGTATCTGACCTGGCTCACGTATCATGCAAGTGTCACGGCGTTTCGGGTTCATGCAGCCTGAAGACCTGCTGGCTCCAGCTGGCTGACTTCCGCAAAGTGGGCGACGCTCTGAAAGAGAAGTATGACAGCGCAGCGGCCATGAAGATTAACGCGCGTGGCAAGCTGGTGCAGGTGCACTCCAAGTTCAACCCACCCACCAGCCACGACCTGGTGTACGTGGAGCCGAGCCCAGACTACTGCGTGCAGAACCACAGCACAGGCTCGCTGGGCACGCAAGGGCGTCTCTGCAATAAGACCTCTGAGGGCATGGACGGTTGCGCGCTCATGTGCTGTGGTCGTGGCTACGACCAGTTCAAGGCCACGCTGGTCGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTATGTCAAGTGCAAGCGCTGCACGAGGGTTGTCGATCAGTTTGTGTGCAAGTAACCCGCTCCTGattgc
>XM_026925729.2
TGTGTCGCAGTCGTGTCTCCTGAAACACAGCAGGATCTGCTGGGAAATCGTACATGGGAACTTGGGAGCGCGAGAAGACGCGTTCCCCCGCGCCATCCTTGCGTACTTGTGAATTTATGTGTCGCACTTAGAGGTCGGACCTGCGAGCTCCTGCTCCTTCACCACGCTGTGGATTGCAGCTGGTTCGAGCTCACACACTACTTGAGGAAGTCGGATAAATATAAGCGGGATTTGCTTTGGAATTTGCATTCCAAATCCATCAATTCCAAGAGGCTCCTCCAGCACGAACCACTTCACTAGCTGCTCTTTGGGGATGCTCTTCATGAACAGGCCATCTTCCTCAGGCTGGGTCAGAGCCATGGACACGCGACATGGAGTGGTTGCCATCACTTTTCTGGCCTTCTTCATGCAAGTGGTGGTGGAGGCTACCTCATGGTGGTCTCTGGCTATGAATCCACTGCTGATTCCCGAGGCTTACATCATAGGCGCACAGCCGCTGTGCAGTCAGTTGGCAGGCTTGTCCAAAGGCCAGAAGAAGCTGTGCCAGCTGTACCAGGACCACATGCAGTACATCGGCGAGGGCGCCAAGACGGGAATCCGCGAGTGCCAGTACCAGTTCCGCCACCGACGCTGGAACTGCAGCACAGTGGATAATTCCTCAGTGTTTGGCCGTGTCATGCAGATCGGAAGCCGTGAGGCAGCGTTTACCTACGCGATCAGCGCAGCGGGTGTTGTGAACGCAGTGAGTCGAGCGTGCAGGGAGGGCGAGTTATCGAGCTGTGGCTGCAGCAGGGCGGCTCGGCCCAAAGATCTGCCCCGAGACTGGCTCTGGGGAGGTTGTGGAGACAACCTCAACTACGGCTACCGCTTCAGCAAGGAGTTTGTGGACGCCCGTGAACGGGAAAAGACCTATGAAAAAGCCTCGATGGAGAGCGCACGGCTCTTGATGAATCTCCATAACAACGAAGCAGGACGGAGGATGGTATCTGACCTGGCTCACGTATCATGCAAGTGTCACGGCGTTTCGGGTTCATGCAGCCTGAAGACCTGCTGGCTCCAGCTGGCTGACTTCCGCAAAGTGGGCGACGCTCTGAAAGAGAAGTATGACAGCGCAGCGGCCATGAAGATTAACGCGCGTGGCAAGCTGGTGCAGGTGCACTCCAAGTTCAACCCACCCACCAGCCACGACCTGGTGTACGTGGAGCCGAGCCCAGACTACTGCGTGCAGAACCACAGCACAGGCTCGCTGGGCACGCAAGGGCGTCTCTGCAATAAGACCTCTGAGGGCATGGACGGTTGCGCGCTCATGTGCTGTGGTCGTGGCTACGACCAGTTCAAGGCCACGCTGGTCGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTATGTCAAGTGCAAGCGCTGCACGAGGGTTGTCGATCAGTTTGTGTGCAAGTAACCCGCTCCTGattgc
>XM_034306869.1
GGTGAACTTGGCGCACACTTTAATGACTATTAGCGGGGCCTCCTTTCCTACTAAACTCTGCAAAATGTAAACCATGACAAATGAGTCTCAATATAAATGCTCCCAAAATCAGAACTGGACTCTAACCGGCTCCTGGAAAATCTTCGACctgttttaagtgtttttttgttgttttctgagGGGGAAATGGCGTAAACATTCACTTTAATTCGTTCCCTCCATTTTAACCTGTTTGTGTGAGTTTCAGCCGCGTGCGTGAATGTTAAATACACTGAAATGCTTCGGCGCAAAGGAATGCAGTCTATCAAGATTGGAGCTGCTCTTTGGGGATGCTCTTCATGAACAGGCCATCTTCCTCAGGCTGGGTCAGAGCCATGGACACGCGACATGGAGTGGTTGCCATCACTTTTCTGGCCTTCTTCATGCAAGTGGTGGTGGAGGCTACCTCATGGTGGTCTCTGGCTATGAATCCACTGCTGATTCCCGAGGCTTACATCATAGGCGCACAGCCGCTGTGCAGTCAGTTGGCAGGCTTGTCCAAAGGCCAGAAGAAGCTGTGCCAGCTGTACCAGGACCACATGCAGTACATCGGCGAGGGCGCCAAGACGGGAATCCGCGAGTGCCAGTACCAGTTCCGCCACCGACGCTGGAACTGCAGCACAGTGGATAATTCCTCAGTGTTTGGCCGTGTCATGCAGATCGGAAGCCGTGAGGCAGCGTTTACCTACGCGATCAGCGCAGCGGGTGTTGTGAACGCAGTGAGTCGAGCGTGCAGGGAGGGCGAGTTATCGAGCTGTGGCTGCAGCAGGGCGGCTCGGCCCAAAGATCTGCCCCGAGACTGGCTCTGGGGAGGTTGTGGAGACAACCTCAACTACGGCTACCGCTTCAGCAAGGAGTTTGTGGACGCCCGTGAACGGGAAAAGACCTATGAAAAAGCCTCGATGGAGAGCGCACGGCTCTTGATGAATCTCCATAACAACGAAGCAGGACGGAGGATGGTATCTGACCTGGCTCACGTATCATGCAAGTGTCACGGCGTTTCGGGTTCATGCAGCCTGAAGACCTGCTGGCTCCAGCTGGCTGACTTCCGCAAAGTGGGCGACGCTCTGAAAGAGAAGTATGACAGCGCAGCGGCCATGAAGATTAACGCGCGTGGCAAGCTGGTGCAGGTGCACTCCAAGTTCAACCCACCCACCAGCCACGACCTGGTGTACGTGGAGCCGAGCCCAGACTACTGCGTGCAGAACCACAGCACAGGCTCGCTGGGCACGCAAGGGCGTCTCTGCAATAAGACCTCTGAGGGCATGGACGGTTGCGCGCTCATGTGCTGTGGTCGTGGCTACGACCAGTTCAAGGCCACGCTGGTCGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTATGTCAAGTGCAAGCGCTGCACGAGGGTTGTCGATCAGTTTGTGTGCAAGTAACCCGCTCCTGattgc
>XM_034306870.1
TTcctggggatttttttttttttaaactgcggTTCGTACAAAGATTTAGACACGTTAGAAAGTTTTATTTCGTTTAAGCGGGCTAATTCAGTGCGACGCTAAGTAGttaatttaaaccattttagCCGAAGCCgtcctgacaaaaaaaataaaaataattaaaaaaaaattaccatccTGCCTTAATATCCACGTGTACATACAATcagAGCTGCTCTTTGGGGATGCTCTTCATGAACAGGCCATCTTCCTCAGGCTGGGTCAGAGCCATGGACACGCGACATGGAGTGGTTGCCATCACTTTTCTGGCCTTCTTCATGCAAGTGGTGGTGGAGGCTACCTCATGGTGGTCTCTGGCTATGAATCCACTGCTGATTCCCGAGGCTTACATCATAGGCGCACAGCCGCTGTGCAGTCAGTTGGCAGGCTTGTCCAAAGGCCAGAAGAAGCTGTGCCAGCTGTACCAGGACCACATGCAGTACATCGGCGAGGGCGCCAAGACGGGAATCCGCGAGTGCCAGTACCAGTTCCGCCACCGACGCTGGAACTGCAGCACAGTGGATAATTCCTCAGTGTTTGGCCGTGTCATGCAGATCGGAAGCCGTGAGGCAGCGTTTACCTACGCGATCAGCGCAGCGGGTGTTGTGAACGCAGTGAGTCGAGCGTGCAGGGAGGGCGAGTTATCGAGCTGTGGCTGCAGCAGGGCGGCTCGGCCCAAAGATCTGCCCCGAGACTGGCTCTGGGGAGGTTGTGGAGACAACCTCAACTACGGCTACCGCTTCAGCAAGGAGTTTGTGGACGCCCGTGAACGGGAAAAGACCTATGAAAAAGCCTCGATGGAGAGCGCACGGCTCTTGATGAATCTCCATAACAACGAAGCAGGACGGAGGATGGTATCTGACCTGGCTCACGTATCATGCAAGTGTCACGGCGTTTCGGGTTCATGCAGCCTGAAGACCTGCTGGCTCCAGCTGGCTGACTTCCGCAAAGTGGGCGACGCTCTGAAAGAGAAGTATGACAGCGCAGCGGCCATGAAGATTAACGCGCGTGGCAAGCTGGTGCAGGTGCACTCCAAGTTCAACCCACCCACCAGCCACGACCTGGTGTACGTGGAGCCGAGCCCAGACTACTGCGTGCAGAACCACAGCACAGGCTCGCTGGGCACGCAAGGGCGTCTCTGCAATAAGACCTCTGAGGGCATGGACGGTTGCGCGCTCATGTGCTGTGGTCGTGGCTACGACCAGTTCAAGGCCACGCTGGTCGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTATGTCAAGTGCAAGCGCTGCACGAGGGTTGTCGATCAGTTTGTGTGCAAGTAACCCGCTCCTGattgc

Function

symbol description
wnt5a Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within pronephros development. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neural crest cell; ovarian follicle; pronephros; and tooth placode. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 1. Orthologous to human WNT5A (Wnt family member 5A).

NR:

description
protein Wnt-5a-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00444 WNT5; wingless-type MMTV integration site family, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925728.2 False 1457 mRNA 0.57 6 20455304 20467426
XM_026925729.2 False 1453 mRNA 0.57 6 20455305 20467426
XM_034306869.1 True 1469 mRNA 0.55 5 20457206 20467426
XM_034306870.1 False 1364 mRNA 0.54 5 20457563 20467426

Neighbor

gene id symbol gene type direction distance location
tlr9 LOC108265704 coding upstream 239399 20209756 ~ 20215905 (+)
LOC113533362 apeh coding upstream 245959 20188800 ~ 20209345 (+)
bsna bsn,LOC108265177 coding upstream 283935 20051109 ~ 20171369 (+)
LOC113533168 LOC108265115 coding upstream 516301 19931379 ~ 19939003 (+)
LOC113533655 LOC108266029,LOC108434414 coding upstream 526530 19862102 ~ 19928774 (+)
LOC113533338 lrtm1 coding downstream 79879 20547305 ~ 20560196 (+)
parapinopsina LOC100304471,LOC108411942 coding downstream 237074 20704500 ~ 20733204 (+)
trnae-cuc_20 NA coding downstream 264974 20732400 ~ 20732471 (+)
LOC113533337 LOC108265089,LOC108443054,LOC108263931 coding downstream 268834 20736260 ~ 20739234 (+)
actr8 actr8 coding downstream 281553 20748979 ~ 20757581 (+)
G135643 LOC107737118 non-coding upstream 440534 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 442537 20012567 ~ 20012767 (+)
G135524 NA non-coding upstream 449596 20005119 ~ 20005708 (+)
G135466 NA non-coding upstream 738325 19716637 ~ 19716979 (+)
G135393 NA non-coding upstream 750837 19704262 ~ 19704467 (+)
G136057 NA non-coding downstream 469697 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 479878 20947304 ~ 20965468 (+)
G136429 NA non-coding downstream 879419 21346845 ~ 21347161 (+)
G136433 NA non-coding downstream 893413 21360839 ~ 21361880 (+)
G136466 NA non-coding downstream 1207432 21674858 ~ 21693702 (+)
LOC113533440 erc2,LOC108264953 other upstream 13113 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 269686 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 552937 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 952661 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 1773372 18436185 ~ 18681932 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 277154 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 1313797 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 1358256 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 1625169 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 2040200 22507626 ~ 22509494 (+)

Expression


Co-expression Network