itgb7 (LOC108271744)


Basic Information

Item Value
gene id itgb7
gene name LOC108271744
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 208913 ~ 230906 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU22870
TTTATAAGCAGTTTGACACTCGCTATGGAAAATAAAGACACTCAGACTTGTGAACTCACTATAGAGGGTTTTTTCCCGTTATTATACCACTGaagtaaacacactcacactgtgtgATGTTTAACAGATCAGATATTCAGTGATAAAGCTATGAAGTGATCAGTAGCTTCATATTAACCAAACGCTCTGCATGCTGTTCTTCAGGagttcttcagttcttcagGAGTCATGAGGTTTGTTCTAGCCTTTGTCCTCGCTCTTCACTTGGTGCCGCTGAGATGTACAGCAGatcCAGCTCCAGTGTGTCAGTCACACTCTACATGCTCTGAGTGTTTGAAGAGTCCAGGATGTGCGTGGTGCAAGCAGCAGGATTTCCTGAAATCTGGAGAGGCAGATGAACGTAGATGCGACTCCGTTGAGTCCCTCGGGATGAGAAAGTGTAAGAGCGACAATGTGATCTATCCCAAACCCGAAACCGTGaccctgaaaaacaacaacctgAACAGCAACCCCAGAAACGTGGTGCAGCTCAAACCACAGAGCCTGAAAGTCAAACTCAGAATCGGTG
>XM_034311974.1
GACAAACAtatctaatattttataataaaacgTATATCAGATTATTCAGTCTACGTGCATCTACACATTAAGTTTAAGCATGAAATCGTTTTTTTgttattggcagatcattttccTTTCGAACTTCAACTTTTAAAAAGAAGTGAAATTAGTGCTACTGACTGCATAATCCTGCATTTGCTGTATAATTAATATGAGTTAAATCTGcctttatttaatatgtatgcTCGTCAGtcatcttttcttttgttagagATGTTAACAGactgtgttttctttctgaCCCAGAAAAATCCCACAGCTGCGTTAGCAGGAAGTCAGCAGCTTAAATGACTCAAATCTACAAGAGAAATGCTTTCTGAAGTCACTGAGCTCCATAAAGTTTTTCCATTCATAAAGTTAAAATTATCTTaattattagagagagagagagagagagagagagagagagagagagagagagagggagaatgagagggagagaatgaaagagggagagtgtgtgtaatgtgtggttTTCCCCATAAGACTGAATTGTCACCTCATTAAACAAGTCAGTCAGGCAAATCATTTCTCCACTGAACTGGTGTGAAGAtgctgtctgtgagctgcagACTGAAAATTCAAAAGCCAGCCtctgcaaccacacacacacacacacacacacacacacacacacacacacacacactcacacagctgtATGAGGAACAGAGACACAGATATACGACACACATTCATTAAAACTCTTCATTCAGGACACACAAACTTCACAGGAACGTTCACGGagttcttcagttcttcagGAGTCATGAGGTTTGTTCTAGCCTTTGTCCTCGCTCTTCACTTGGTGCCGCTGAGATGTACAGCAGatcCAGCTCCAGTGTGTCAGTCACACTCTACATGCTCTGAGTGTTTGAAGAGTCCAGGATGTGCGTGGTGCAAGCAGCAGGATTTCCTGAAATCTGGAGAGGCAGATGAACGTAGATGCGACTCCGTTGAGTCCCTCGGGATGAGAAAGTGTAAGAGCGACAATGTGATCTATCCCAAACCCGAAACCGTGaccctgaaaaacaacaacctgAACAGCAACCCCAGAAACGTGGTGCAGCTCAAACCACAGAGCCTGAAAGTCAAACTCAGAATCGGTGTGCCACAGGAATTTAAGGTGGAGTTTAAGAGGGCTGAAGGTTACCCCATAGACCTGTACTATCTGATGGACCTGAGCTACTCCATGAAGGACGATCTGGAGAAGATTAAGACTCTCGGGCAGGACATTCTGAACAAACTGCAGGACGTCACGCAGACCGTCCGCATCGGTTTCGGCTCATTTGTTGACAAGGAGAAACTGCCGTACGTTAGCCAGGCTAAGGCCAGGAGACAGAACCCCTGTCCCACCCGCACAGACATCTGCCAGCCCGCCTTCACCTTTCACAACGTTCTGCCACTGACCGGTGATGCCAATGAGTTTAAGAGAGAAGTGAGCAAGCAGAAGATCTCTGGTAACCTGGACTCACCTGAAGCTGGTTTAGATGCTATCATGCAGGCTGCCGTGTGCCAGGAAATCGGCTGGGGGAATGTGACTCGGATTCTGGTCTACACCTCTGATGACACCTTTCACATGGCAGGAGATGGTCGACTTGCTGGAATATTTACGCCACATGATGGAAAGTGTCATCTTAAACCTGACAGTTTTTATGATGGCACATTGTTTgattATCCGTCAGTAGGCCATCTCTCTCATGTTCTTCAAGCTAATAACATTCAGCTGATATTTGCAGTGACTGAAAACAGCTTTCCAGCCTATCGGgcGCTGAGTGAGTTAATTCCTCAGTCAGTTGTTGGTGTGTTGAAGAATGACTCTAGTAACGTGGTCCAGCTGATCTCCGAGGCTTATGGGGTGAGTATTGTACTGTGGACTGTGTtgtattgtttctacagtacaGTGCTGTTGTGTTTATGTTCTTCTACACACTTTGTATTTCACTCAACACTCatcattcatttacattcagtCCTGTCAGTAGTGCAACTTAGCCAACATTACACTTTATTCTTTGTCaatatCAGAACGTGGGTAGTTGAGAGAGGAGAGCTGTACTGCATCCGAGATGAGAAGGTTTTCTTCACTGTGCGTCTGAACGCGTCTGAATGTCTGGCTGAGTCGAAGACGTTCGAGATCCAACTGAAGGGCATTAATGAGGGTCTGAAGGTTACCGTGGAAACGCTATGTGACTGTAATTGTGGTGATGAGCAGAAGGACTCAGAACACTGTGCAGGAAACGGGACCCTCGAGTGTGGAGTCTGCAGgtgTAATAAAGGTTACTTAGGTCAGCACTGTAAGTGTCAGAGTATCAGTGACAGCGCCATGCGTATGTCCTGTCGCCGTGACAacagctctcaggagtgcagcggtcacggtgtgtgtgagtgtggtcgGTGTGTGTGCAACGGACATTTCAGTGGGCAGTACTGCGAGTGTGACGATGCCAGCTGTGAACGCTACAACAACAAGATCTGCAACGgtaaAGGTCAATGTAAATGTGGAAAGTGTGAGTGTCAGGCTAACTACACTGGCTCAGCGTGTGAGTGCTCCACAGACATGAGTATGTGTGCTCGGAAATATGGAAAGTTGTGTAGCGGCCAGGGCAAGTGTAAGTGTAACCGCTGTGAGTGTAACACTGACTTCGTGGGACTCGACTGCTCTCAGATCGCTAATCCATGCCCAAAATATCAacccTGTATGGCCTGTACGCTCTCTAAGAAGAACTGCACGGAGGTGTGTGCGTCAGTCCAGACGTCCCGGAAGGAAGGCTTTCACGTGCTGCAGTGTGTACACGAATCCATCAGCTATGATGTGAGTCTGGATGCTGAGGGCAATGTGCTGATCACCTACGCTGACCTACCACATACTATTGATAAAACCAAAGTGATCATCAGCTCCAGCGTTTCAGGCATCGTCTTCATTggcatcctcatcatcatcatctacaaAATCCTGCTGGAGCTTTACGACCGCCGGGAATACCACAACTTCCTCAAAGCTCAGGAGAACACCAAGTGGGAGGAGGGAAGCAATCCTCTGTACAAGGAAGCCACTACTACGGTGTTAAACCCTCTGCACATACAGGACAATTAAACACCAGCCTCAGGACCACACACAGGACCGGAGAacatcagagtgtgtgtgtgtgtgtgtgtgtgttaaacagtgAGTTTCAGTATTCTTTTACACATTAGAGTGTTATTAGCAGTTAttaaattgtattattgtattgtagAGTATattctataattctataatgctttgtgacaatgttaaaagtgctatacaaataaaatgggaTGGAattgaatgtatttatgttATATTGATGAAAGTGTCAATTAGcgagataaatatttaaagacattAGACAAGGTCTAATATCAATGATTTATGTTACATGTACCattatgttatttaaataatgtaaacacTCTTTAGATATCTAGAGGGAGATATTTCTAAAACTTCATCGCTTTTCTGACCGCTGAAGCTCTTCAGGTTCCTCagtggttctttggatagttaagacGGTTCTTGGGAATCTCCTCTGAAATGGAGACACTCTGTTATAGGGCTCGGTACAGAAACTTCAAACCTTTAAATGAAGAACCCTTTActgttctagatttaaccttatTCTTTTgcatatgttattttattaaaagttttcTTCTATGAtctttgatggaaatgaaagtATATTTCTACTCTTTATAATACTCTTGTATAATTTTCTTGTTagattaaatgatattttaaggcaagccatcatcatcatcatcatcatcatcttcttcttcttcttcttcttcttctgatattaatacaaatgaaatgtGAGTAAATCAGTATTTAAGGAGCCTCTTCAGCAGAAAACCATACAGTGATTTTGATGTACAGTCCAGTGGTTCTCAGGGTTCTCAGGGTTCTCAGGGTTCTCCGAGATGTAACTAGAtgcctgttttttgttttgtttttttttgttacggAAAATACAACCAAAAACTATTAAGGTTcttgtatttattattcactTCCTATAGTTATTAGTGTGCTTGACTGGATTGAAttggattatgttcatgaataaatctgtttacaGTCTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22870 False 568 TUCP 0.45 3 213531 215935
XM_034311974.1 True 4156 mRNA 0.43 16 208913 230906

Neighbor

gene id symbol gene type direction distance location
pfkmb LOC108271743,LOC108440812,LOC107582696,LOC107711051,LOC107585122 coding upstream 171 187998 ~ 208742 (+)
myl6 myl6,zgc:153867,LOC107390870,LOC108440770,LOC108271738,LOC103021650,LOC103044924,LOC105013534 coding upstream 92603 107592 ~ 116310 (+)
tsfm NA coding upstream 102478 102394 ~ 106435 (+)
sumf1 sumf1,LOC107673603 coding upstream 113625 91376 ~ 95288 (+)
pfkfb4b LOC108440764,LOC103024058,LOC107748389,LOC107711047,LOC107673509,LOC107585116 coding upstream 179583 12397 ~ 29330 (+)
LOC117599270 NA coding downstream 1871 232777 ~ 254459 (+)
LOC117595945 NA coding downstream 25578 256484 ~ 260023 (+)
krt18b LOC108272218 coding downstream 48261 279167 ~ 286313 (+)
si:dkey-195m11.8 LOC108272232 coding downstream 57744 288650 ~ 291418 (+)
LOC117595952 LOC108271752 coding downstream 147524 378430 ~ 381605 (+)
G19208 NA non-coding upstream 86813 119766 ~ 122100 (+)
G19184 LOC108271603,LOC108440748,LOC107673508 non-coding upstream 163128 44999 ~ 45785 (+)
G19242 NA non-coding downstream 44490 275396 ~ 276178 (+)
G19250 NA non-coding downstream 66237 297143 ~ 319434 (+)
G19301 NA non-coding downstream 154166 385072 ~ 385892 (+)
G19304 NA non-coding downstream 163852 394758 ~ 396269 (+)
G19313 NA non-coding downstream 177260 408166 ~ 460280 (+)
LOC113545897 NA other downstream 30078 260984 ~ 273928 (+)
LOC113545899 LOC108272223 other downstream 323316 554222 ~ 558469 (+)
G19395 LOC108272241 other downstream 378293 609199 ~ 612726 (+)
vdrb vdrb,LOC108272216,LOC107585146,LOC107673565,LOC108441087,LOC107667372,LOC107582718,LOC107733590,LOC107711077 other downstream 739051 969957 ~ 1002458 (+)
cnga3a cnga3a,LOC108271559,LOC107733584,LOC108441138 other downstream 851530 1082436 ~ 1095954 (+)

Expression


Co-expression Network