LOC113533127


Basic Information

Item Value
gene id LOC113533127
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5405967 ~ 5414086 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26253
TACAAGGATAGGCGACTACCGAGATATCAAAATCTATGTGAAGTCGAACACGCCTACAGATTCAGTATTGTTAATCTAAACGCGGTAAAACGATAGTACACCATGTCATTTGATGGAGTGAAGTGGTATAAGCGCACAGCACTGATGTATGCAATCGGAACATGGACTTTGCTTGGGTCTTGTgtatattacacattttacaaaGGCGACGCACGAGttgtTATACGTAAAGAGGAGGAGGACGCAACACCAAATGTGAGACTATTTAAATCATCTCACATGTCAGCAAAAATAACCTACAAAGAAAATTTTGTCCCATATTCCACAAGATTTCTGGAACTTTTCAGACCCAGAGCTGATGACTCTTCAGGAagtcaaaatgaagaaaaataaaatgcatgtcattttaaatgGCACTGCTATGCAATGTATTTCC
>XM_026925059.2
TACCATGCGCGCATGCGCGCTACAAGGATAGGCGACTACCGAGATATCAAAATCTATGTGAAGTCGAACACGCCTACAGATTCAGTATTGTTAATCTAAACGCGGTAAAACGATAGTACACCATGTCATTTGATGGAGTGAAGTGGTATAAGCGCACAGCACTGATGTATGCAATCGGAACATGGACTTTGCTTGGGTCTTGTgtatattacacattttacaaaGGCGACGCACGAGttgtTATACGTAAAGAGGAGGAGGACGCAACACCAAATGTGAGACTATTTAAATCATCTCACATGTCAGCAAAAATAACCTACAAAGAAAATTTTGTCCCATATTCCACAAGATTTCTGGAACTTTTCAGACCCAGAGCTGATGACTCTTCAGGAagtcaaaatgaagaaaaataaaatgcatgtcattttaaatgGCACTGCTATGCAATGTATTTCCTGTCTATGGACAGTTTTCCATGAAAACTTCCACTTTTCCAGTTTCCAtcttctaaaattaaaaaattaaaaagaaagtgtCTGGGTTAGTTTTTTGCTTGcatcatttcaaaacaaaaaactgtgtTAGGATAATGAGGTTCAAAATTATCTTGACTGATGTTTTTTCCCTGTAATAAGAATTTGTATTGAGAAGTGATAcgtgtattattgtgtattattactattagtatATTGTGTTAACATGATCATTAAGATTTTCAGTCATCTAGTCATCTTACACATTTTGAAATTGTCTCAGACCCAGAGGTTTAACCTTGACTTTGTTCTTGAATATGCATCACTCAGGCAATGACAAACTGTACGGTTGTCTTGACATAATACTTCTGAATTTTACATTCTAAATTTGTTACACATTCTCATTTTCTTATTGTTAGGTCAATTATGTCCTTTAGTGATTTTGTTTGTGGGTTGTTTATCCCTATATTCCCATGCTCATAATGGTGTCCAGGAATAAGTCcttgatatatttatttttaggcCTGTCCTTTAAGAACTTTACCCCTCTAATTTCTCCAAATACTGTCTAATGTCCAactcaataaaattaaataaaaagtttttggAGAAAGTTGTCCCCCCACAGGCCCAGTATTTTCTAAGTTGGAATATTCATCATTATAAAGTATATTTCAGCAAGGGTGATTTTATGGTTTATCACCACAGTAAGAAAGTGTGACGTGCAAACACTGAGGAGATAGAAattgtgtgtgggggtgtgtgcacatgcatggTTACACAGTACATCACCTCTTTTCCCCCCCCATCAGAAAATGTGCAATGTTAGCTAGTATGGTTGGTTAAAAATCAATTACAGTGCCTAGTAGGGCTGTGTGAAATTGTGATACATATCAGTGTGGTGGAAAATATTATCTtctgaagacaaataaaaagttaaactCAGAGACA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005840 ribosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU26253 False 436 lncRNA 0.39 2 5406935 5414066
XM_026925059.2 True 1424 mRNA 0.36 2 5405967 5414086

Neighbor

gene id symbol gene type direction distance location
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding downstream 12446 5346109 ~ 5393521 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding downstream 80979 5264912 ~ 5324988 (-)
nufip1 nufip1 coding downstream 186680 5210496 ~ 5219287 (-)
inha inha,LOC107586362 coding downstream 686340 4717410 ~ 4719627 (-)
igfbp2a LOC108273244,LOC108438161 coding downstream 787500 4590384 ~ 4618467 (-)
dtd1 dtd1 coding upstream 8116 5422202 ~ 5425120 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding upstream 23462 5437548 ~ 5463126 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding upstream 93926 5508012 ~ 5520353 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding upstream 180023 5594109 ~ 5631257 (-)
osgn1 LOC108272601 coding upstream 224510 5638596 ~ 5651285 (-)
G21975 NA non-coding downstream 74829 5330826 ~ 5331138 (-)
G21963 NA non-coding downstream 80444 5325159 ~ 5325523 (-)
G21960 NA non-coding downstream 137924 5267485 ~ 5268043 (-)
G21944 NA non-coding downstream 177601 5228086 ~ 5228366 (-)
LOC117596013 NA non-coding downstream 463240 4939698 ~ 4942727 (-)
G22156 NA non-coding upstream 60471 5474557 ~ 5474767 (-)
G22186 NA non-coding upstream 237789 5651875 ~ 5652106 (-)
G22188 NA non-coding upstream 243358 5657444 ~ 5657651 (-)
G22182 NA non-coding upstream 266035 5680121 ~ 5680482 (-)
G22203 LOC108272599,LOC108433672 non-coding upstream 276601 5690687 ~ 5691117 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 204755 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 503956 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1073796 4332099 ~ 4332171 (-)
G21434 NA other downstream 1148880 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 1627979 3750018 ~ 3777988 (-)
romo1 romo1,LOC102788570 other upstream 117951 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 542553 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 659949 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 791198 6205284 ~ 6208666 (-)
G22591 NA other upstream 1065316 6479402 ~ 6480011 (-)

Expression


Co-expression Network