romo1 (romo1,LOC102788570)


Basic Information

Item Value
gene id romo1
gene name romo1,LOC102788570
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5532037 ~ 5536060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26420
AATGGTGTCTTTCTGAAAGGGCTAGCATcgacaacacacacaacacgcagCTGTACAAACTGCGAGCCTCGAATCACCTTTTAAAACGCTTCTTGGAAATACTCGATCAGTTATTTGGGAAAGACCTGCCCAGAGTACAAATGCCTGTAGCTGTAGGACCGTATGGACAGGCACAGCCAAACTGTTTCGACAGAGTCAAGATGGGCTTCATGATGGGCTTCGCAGTCGGAATGGCCGCTGGTGCCATGTTTGGAACTTTCTCATGCCTACGAATTGGGATGAGAGGTCGAGAGCTGATGAGTGGAGTAGGAAAGACCATGATGCAAAGTGGGGGCACATTTGGAACCTTCATGGCCATTGGCATGGGCATTCGCTGCTGACTGCGCTGTTCACTTTATTTCACTCTAAATTCCTTTCATATATTCATAATGCCATAAAACT
>TU26421
ctctgctctgcctGTAGGAGGCGCTGGTCTCCTCTTACTGCTTCCTGTTGCGTAATGGTGTCTTTCTGAAAGGGCTAGCATcgacaacacacacaacacgcagCTGTACAAACTGCGAGCCTCGAATCACCTTTTAAAACGCTTCTTGGAAATACTCGATCAGTTATTTGGGAAAGACCTGCCCAGAGTACAAATGCCTGTAGCTGTAGGACCGTATGGACAGGCACAGCCAAACTGTTTCGACAGAGTCAAGATGGGCTTCATGATGGGCTTCGCAGTCGGAATGGCCGCTGGTGCCATGTTTGGAACTTTCTCATGCCTACGAATTGGGATGAGAGGTCGAGAGCTGATGAGTGGAGTAGGAAAGACCATGATGCAAAGTGGGGGCACATTTGGAACCTTCATGGCCATTGGCATGGGCATTCGCTGCTGACTGCGCTGTTCACTTTATTTCACTCTAAATTCCTTTCATATATTCATAATGCCATAAAACT
>TU26422
AATGGTGTCTTTCTGAAAGGGCTAGCATcgacaacacacacaacacgcagCTGTACAAACTGCGAGCCTCGAATCACCTTTTAAAACGCTTCTTGGAAATACTCGATCAGTTATTTGGGAAAGACCTGCCCAGAGTACAAATGCCTGTAGCTGTAGGACCGTATGGACAGGCACAGCCAAACTGTTTCGACAGAGTCAAGATGGGCTTCATGATGGGCTTCGCAGTCGGAATGGCCGCTGGTGCCATGTTTGGAACTTTCTCATGCCTACGAATTGGGATGAGAGGTCGAGAGCTGATGAGTGGAGTAGGAAAGACCATGATGCAAAGTGGGGGCACATTTGGAACCTTCATGGCCATTGGCATGGGCATTCGCTGCTGACTGCGCTGTTCACTTTATTTCACTCTAAATTCCTTTCATATATTCATAATGCCATAAAACTGAGTTTGtgttaataaaattgtaatttaaaacaattaaaaaaagttgtaaGACATACAGATGCAAGATACAGAACTTTGGAATTTGTCATGTGATAATTGCAGAAGTCTATTATGCTTTATTAGAGAGAATGTAGAGAAAGTCTTATGCTTTACAATAGAAAGTGTGCAACTCAATATTCGCAATTCAAAATGAAGTTTGTGCATAATCAATTTCTAAACAGCTTTCAGTGACTACCTCTTTGTAGACACTGAGGCGCTGCTTTTGGAGAGAAGAGGGTTGAGGTAATGAAGGAGAGGAGCCATCTTCGGTTTCTACTACAAGCATCAATATAACAGTTGTACAAATAGTGGAAAGTGACAGGCTTGTATTAATTTAGAATACCTAATAACagcttaaaatatttcagggtAGACAGACAGCCATTAAGTTGGTTTAAAGTGAATTGATTCTGAAGATCACTTTATTGCAGACCTCTGTTCACCTGAATTGGCAAACAAACAAGACTCTGTCTATTTCTATTGAAAAATTAGGCTCTACTTGTTACCTGTGTTTCATCTCTATACTTTCTCTACACACCTCTATAGGTGCTTGtattacaacaacaaaaaaaaataggtcCTAATGGTGTGGTCAGGGAGGTGCTCCCTTAGAATGTGACAGTTCTTAGATGATGCTTAAAAGTAAAGCTTCTTTTAGACAAATGTTGCAGACAAATTCTAATATCACTCAGATGTGACTCACATAGTGATTTGGCCATTTCAGCAAACATGTTGACTATGGATTTACAATCATACCattacaatttaaatttaaatgcaaaaatcttAATTTGCACTTATGTTGAATTTTTATCATACCATCTGAAATTGAATTTTGTGGTTTGCAGAAGAGCAATATAATATCTAAAACTGAGATTCACACTCAGAGGTGTGCAACTGAATGTTTGCAATTCAAAATGAAGTTTGTGCATAATCAATTTCTAAATAGCTTTCAGTCTCTTTCAGTTTGAATTTTTAGATtcatattcaaaataataatcaagTAACTTGCAAAAGCAGTCGAAGACAGAACCCCTCTCCTCTTGCCcaaatgaatcacattttaaaaagtaaaaaaaaaaagtttatattctAATCTGCTATATTAAGAGTGGAAAAATGTTTGATACTGTAAATCTTGGCTCGGAAGATCCTGCTTACATGGTCCCACTCACTTGCTTCAAGCATTTCAGCCCATCTGCTGTTCTGCAATatgctgcagtgtgtttatgAAAGGAGAGGCATTTTATGTGTAACTGCTTCTGCCTAAATGTTACCCAGATGTTATTTGAAAGTGAATCTATAAATGTGAATTAACAGAGACTAAATGCTGTTTAGAAATTGATTAGATGTGTACTTCATTCTGAATTTCAAAATCATACACCCTTGCATGAAAttcacatttcatatttcaagTTTTATACTGTACTTTTGCAAACCATGAAATTCACTTTAAGTCAAATATTATTCAATCTGCATGGTACAAGATCAAAATAACATTCCAACTGAGATTTTTGCATTTAGATTCAAATTCCTAATGGCAGGTTTCAAACTCTAGAGTTGACATTTGTATGTTGCCCAAGTTCATGTAGCTGTATTGATGAGTGGTATTGTAGGTTTAAAAACCTTGATCTGAAACCTGatattgtaaatttattttaaaaaagctacaTACCTTGTGCTGCTGCGACATTAGTCCCATCTAGTGGGTTGACAATTCCAGGATAATCTTTACCAAATGAGAGATGTTTAATCAAATGGGTCATGTTGATCTATGGatatttaagaaattaaattaacttACACAAATGGtataaatattgataatatactgtatctgaccttgtagaataaataaaaacaagaagcaAGGCTTACATTATCCAGTCCATAACTCTGCAAATCATGAACTGAGGAGGGAAAAAAGTTTTGGCAAACATGTTATAAGTTGTTTGGTTGTGCAAAGTAACTCcttgattctgattagtcaaCAAAGTCACAATTCTGGAATGGAAGCAAAGCATAATAAAACGGTGAGAAACCAAAG
>XM_026915820.2
TCCTCTTACTGCTTCCTGTTGCGTAATGGTGTCTTTCTGAAAGGGCTAGCATcgacaacacacacaacacgcagCTGTACAAACTGCGAGCCTCGAATCACCTTTTAAAACGCTTCTTGGAAATACTCGATCAGTTATTTGGGAAAGACCTGCCCAGAGTACAAATGCCTGTAGCTGTAGGACCGTATGGACAGGCACAGCCAAACTGTTTCGACAGAGTCAAGATGGGCTTCATGATGGGCTTCGCAGTCGGAATGGCCGCTGGTGCCATGTTTGGAACTTTCTCATGCCTACGAATTGGGATGAGAGGTCGAGAGCTGATGAGTGGAGTAGGAAAGACCATGATGCAAAGTGGGGGCACATTTGGAACCTTCATGGCCATTGGCATGGGCATTCGCTGCTGACTGCGCTGTTCACTTTATTTCACTCTAAATTCCTTTCATATATTCATAATGCCATAAAACTGAGTTTGtgttaataaaattgtaatttaaaacaattaaaaaaagttgtaaGACATACAGATGCAAGATACAGAA

Function

symbol description
romo1 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

NR:

description
reactive oxygen species modulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26420 False 441 TUCP 0.47 3 5534124 5536007
TU26421 False 494 TUCP 0.48 3 5534124 5536060
TU26422 True 2528 lncRNA 0.35 3 5532037 5536007
XM_026915820.2 False 539 mRNA 0.44 3 5534050 5536031

Neighbor

gene id symbol gene type direction distance location
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 11684 5508012 ~ 5520353 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding downstream 68911 5437548 ~ 5463126 (-)
dtd1 dtd1 coding downstream 106917 5422202 ~ 5425120 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding downstream 138516 5346109 ~ 5393521 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding downstream 207049 5264912 ~ 5324988 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding upstream 58049 5594109 ~ 5631257 (-)
osgn1 LOC108272601 coding upstream 102536 5638596 ~ 5651285 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding upstream 123743 5659803 ~ 5679959 (-)
chd6 chd6,LOC107666014 coding upstream 225677 5761737 ~ 5863433 (-)
psmf1 psmf1,LOC107580402 coding upstream 446524 5982584 ~ 5989372 (-)
G22156 NA non-coding downstream 57270 5474557 ~ 5474767 (-)
G21975 NA non-coding downstream 200899 5330826 ~ 5331138 (-)
G21963 NA non-coding downstream 206514 5325159 ~ 5325523 (-)
G21960 NA non-coding downstream 263994 5267485 ~ 5268043 (-)
G21944 NA non-coding downstream 303671 5228086 ~ 5228366 (-)
G22186 NA non-coding upstream 115815 5651875 ~ 5652106 (-)
G22188 NA non-coding upstream 121384 5657444 ~ 5657651 (-)
G22182 NA non-coding upstream 144061 5680121 ~ 5680482 (-)
G22203 LOC108272599,LOC108433672 non-coding upstream 154627 5690687 ~ 5691117 (-)
G22201 NA non-coding upstream 165557 5701617 ~ 5702754 (-)
LOC113533127 NA other downstream 117951 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 330825 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 630026 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1199866 4332099 ~ 4332171 (-)
G21434 NA other downstream 1274950 4256668 ~ 4257087 (-)
blcap blcap,bc10 other upstream 420579 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 537975 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 669224 6205284 ~ 6208666 (-)
G22591 NA other upstream 943342 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2724425 8260485 ~ 8265229 (-)

Expression


Co-expression Network