G22156


Basic Information

Item Value
gene id G22156
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5474557 ~ 5474767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26423
GAGACAGAGCTaccagcacagagctgtgtgtgcgtgagtgtgtatgtgcatctTCACTGAAAAGCGAAAGTAAAGATAGAAAGAATAAAGCGCCttttgagttgtcccaagcctgcctcctgcttcctcattATCTTCCCGAACTTGGGAAAGATGTACAAACACTTGTCATGGCGGGACAAAACCATACCTATAACAgccttctggaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26423 True 211 lncRNA 0.46 1 5474557 5474767

Neighbor

gene id symbol gene type direction distance location
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding downstream 11431 5437548 ~ 5463126 (-)
dtd1 dtd1 coding downstream 49437 5422202 ~ 5425120 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding downstream 81036 5346109 ~ 5393521 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding downstream 149569 5264912 ~ 5324988 (-)
nufip1 nufip1 coding downstream 255270 5210496 ~ 5219287 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding upstream 33245 5508012 ~ 5520353 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding upstream 119342 5594109 ~ 5631257 (-)
osgn1 LOC108272601 coding upstream 163829 5638596 ~ 5651285 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding upstream 185036 5659803 ~ 5679959 (-)
chd6 chd6,LOC107666014 coding upstream 286970 5761737 ~ 5863433 (-)
G21975 NA non-coding downstream 143419 5330826 ~ 5331138 (-)
G21963 NA non-coding downstream 149034 5325159 ~ 5325523 (-)
G21960 NA non-coding downstream 206514 5267485 ~ 5268043 (-)
G21944 NA non-coding downstream 246191 5228086 ~ 5228366 (-)
LOC117596013 NA non-coding downstream 531830 4939698 ~ 4942727 (-)
G22186 NA non-coding upstream 177108 5651875 ~ 5652106 (-)
G22188 NA non-coding upstream 182677 5657444 ~ 5657651 (-)
G22182 NA non-coding upstream 205354 5680121 ~ 5680482 (-)
G22203 LOC108272599,LOC108433672 non-coding upstream 215920 5690687 ~ 5691117 (-)
G22201 NA non-coding upstream 226850 5701617 ~ 5702754 (-)
LOC113533127 NA other downstream 60471 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 273345 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 572546 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1142386 4332099 ~ 4332171 (-)
G21434 NA other downstream 1217470 4256668 ~ 4257087 (-)
romo1 romo1,LOC102788570 other upstream 57270 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 481872 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 599268 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 730517 6205284 ~ 6208666 (-)
G22591 NA other upstream 1004635 6479402 ~ 6480011 (-)

Expression


Co-expression Network